{"id":8783,"date":"2020-06-12T22:16:18","date_gmt":"2020-06-12T21:16:18","guid":{"rendered":"https:\/\/emilkirkegaard.dk\/en\/?p=8783"},"modified":"2020-06-14T02:33:21","modified_gmt":"2020-06-14T01:33:21","slug":"installing-r-on-ubuntu-20-04-still-too-damn-difficult","status":"publish","type":"post","link":"https:\/\/emilkirkegaard.dk\/en\/2020\/06\/installing-r-on-ubuntu-20-04-still-too-damn-difficult\/","title":{"rendered":"Installing R on Ubuntu 20.04: still too damn difficult"},"content":{"rendered":"
\"\"<\/a>
Semi-related<\/a><\/figcaption><\/figure>\n

Here’s a whiny post on annoying R features. I love R and all, but it’s obnoxious to install. Not only does it take a long time to compile so many packages, this step typically has to be repeated a few times due to unforeseeable errors. These errors are typically also hard to find, one has to skim the super long install log in the console to find the 1-3 relevant lines. Here’s a concrete example.<\/p>\n

I am installing R on a new Ubuntu 20.04 VPS<\/a>. First, I install the stuff I want, but it turns out some packages on CRAN have already moved to requiring R > 4.0, meaning that the default R version in Ubuntu 20.04 (released in April 2020!) is already outdated to the point of being broken. Such is life in the R community. To get specific, I was trying to install psych package<\/a>, which depends on mnormt package<\/a>, and that package has moved to requiring R > 4.0 already. However, psych<\/strong> hasn’t, so trying to install psych<\/strong> results in missing and uninstallable dependencies. Cryptic error for novice users.<\/p>\n

> install.packages(\"psych\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/3.6'\r\n(as 'lib' is unspecified)\r\nWarning: dependency 'mnormt' is not available\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/psych_1.9.12.31.tar.gz'\r\nContent type 'application\/x-gzip' length 1724122 bytes (1.6 MB)\r\n==================================================\r\ndownloaded 1.6 MB\r\n\r\nERROR: dependency 'mnormt' is not available for package 'psych'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/3.6\/psych'\r\n\r\nThe downloaded source packages are in\r\n\t'\/tmp\/RtmpUWpHw0\/downloaded_packages'\r\nWarning message:\r\nIn install.packages(\"psych\") :\r\n  installation of package 'psych' had non-zero exit status\r\n> install.packages(\"mnormt\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/3.6'\r\n(as 'lib' is unspecified)\r\nWarning message:\r\npackage 'mnormt' is not available (for R version 3.6.3)<\/pre>\n
OK, I looked at CRAN page and realized the R 4.0 issue. But to do that, one has to know to look for the initial lines when starting R:<\/p>\n
R version 3.6.3 (2020-02-29) -- \"Holding the Windsock\"\r\nCopyright (C) 2020 The R Foundation for Statistical Computing\r\nPlatform: x86_64-pc-linux-gnu (64-bit)<\/pre>\n
OK, no problem, we go to the Ubuntu page for R CRAN (https:\/\/cran.r-project.org\/bin\/linux\/ubuntu\/<\/a>), and we find the apt source line we need to add. This one has to fit the version of Ubuntu. If you are running some Ubuntu spin-off, like Linux Mint, you need to first check which version of Ubuntu it is based on (it’s the last LTS). For instance, if we are wondering about Mint 19.3 Tricia, we go to the Mint website, and find the release notes<\/a>, and somewhere in there it says:<\/p>\n
\n
Other issues<\/h3>\n
Linux Mint 19.3 is based on Ubuntu 18.04. Make sure to read the Ubuntu release notes<\/a>.<\/p><\/blockquote>\n
Right, so it’s Ubuntu 18.04. And, what is the name of that one? The sources on CRAN site does not use the version numbers, they use the release names. OK, so we look up Ubuntu release names: https:\/\/wiki.ubuntu.com\/Releases<\/a>. They have a table like this:<\/p>\n
\"\"<\/a><\/p>\n
So if we are working with Mint 19.3, we need to look at Ubuntu 18.04, which is “Bionic Beaver” (what even is that?). So “Bionic” is the release name. For the server, however, it’s Ubuntu 20.04, so it’s “Focal Fossa” we are looking for (apparently a weird cat-creature<\/a>). Back to the server, we then add the right source to the sources.list file:<\/p>\n
deb https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/<\/pre>\n
(This line says something about “cran40”, which I guess means R 4.0 CRAN version, and it says “focal”, like the name above for Ubuntu 20.04.)<\/p>\n
And then we update! Except we don’t because:<\/p>\n
root@small-services:\/srv\/shiny-server\/apps\/ceiling_effects# apt update\r\nHit:1 https:\/\/repos.insights.digitalocean.com\/apt\/do-agent main InRelease\r\nGet:2 http:\/\/mirrors.digitalocean.com\/ubuntu focal InRelease [265 kB] \r\nGet:3 http:\/\/security.ubuntu.com\/ubuntu focal-security InRelease [107 kB] \r\nGet:4 http:\/\/mirrors.digitalocean.com\/ubuntu focal-updates InRelease [107 kB] \r\nGet:5 http:\/\/mirrors.digitalocean.com\/ubuntu focal-backports InRelease [98.3 kB] \r\nGet:6 http:\/\/mirrors.digitalocean.com\/ubuntu focal-updates\/main amd64 Packages [190 kB] \r\nGet:7 http:\/\/mirrors.digitalocean.com\/ubuntu focal-updates\/universe amd64 Packages [106 kB] \r\nGet:8 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ InRelease [3622 B] \r\nErr:8 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ InRelease\r\nThe following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9\r\nReading package lists... Done\r\nW: GPG error: https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9\r\nE: The repository 'https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ InRelease' is not signed.\r\nN: Updating from such a repository can't be done securely, and is therefore disabled by default.\r\nN: See apt-secure(8) manpage for repository creation and user configuration details.<\/pre>\n
Ahhhh, so it’s “not signed”. We need to import some … signing or something like that. Back to the CRAN site, we find mentioned further down, something about keys, so we try one of these commands…:<\/p>\n
root@small-services:\/srv\/shiny-server\/apps\/ceiling_effects# sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9\r\nExecuting: \/tmp\/apt-key-gpghome.Ap4Kh9mDsS\/gpg.1.sh --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9\r\ngpg: key 51716619E084DAB9: public key \"Michael Rutter <marutter@gmail.com>\" imported\r\ngpg: Total number processed: 1\r\ngpg: imported: 1\r\nroot@small-services:\/srv\/shiny-server\/apps\/ceiling_effects# apt update\r\nHit:1 https:\/\/repos.insights.digitalocean.com\/apt\/do-agent main InRelease\r\nGet:2 http:\/\/mirrors.digitalocean.com\/ubuntu focal InRelease [265 kB] \r\nHit:3 http:\/\/mirrors.digitalocean.com\/ubuntu focal-updates InRelease \r\nHit:4 http:\/\/mirrors.digitalocean.com\/ubuntu focal-backports InRelease \r\nGet:5 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ InRelease [3622 B] \r\nHit:6 http:\/\/security.ubuntu.com\/ubuntu focal-security InRelease \r\nGet:7 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ Packages [19.6 kB]\r\nFetched 288 kB in 2s (169 kB\/s)\r\nReading package lists... Done\r\nBuilding dependency tree \r\nReading state information... Done\r\n39 packages can be upgraded. Run 'apt list --upgradable' to see them.<\/pre>\n
So, error is gone, and it works! So let’s upgrade:<\/p>\n
root@small-services:\/srv\/shiny-server\/apps\/ceiling_effects# apt upgrade\r\nReading package lists... Done\r\nBuilding dependency tree \r\nReading state information... Done\r\nCalculating upgrade... Done\r\nThe following packages will be upgraded:\r\napparmor apport libapparmor1 libnss-systemd libpam-systemd libproxy1v5 libsystemd0 libudev1 open-iscsi python3-apport python3-problem-report r-base r-base-core\r\nr-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix\r\nr-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended systemd systemd-sysv systemd-timesyncd ubuntu-minimal\r\nubuntu-server ubuntu-standard udev\r\n39 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.\r\nNeed to get 53.4 MB of archives.\r\nAfter this operation, 735 kB of additional disk space will be used.\r\nDo you want to continue? [Y\/n]<\/pre>\n
We see it wants to update R (that’s the r-base<\/em> package), but it doesn’t say which version we are updating to, annoying, because it could be something other than 4.X. Alright, we try our luck, and in the middle of the upgrade output we see:<\/p>\n
Get:19 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-lattice 0.20-41-1cran1focal0 [1174 kB]\r\nGet:20 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-matrix 1.2-18-1focal0 [3432 kB]\r\nGet:21 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-survival 3.1-12-1cran1.2004.0 [7462 kB]\r\nGet:22 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-spatial 7.3-11-2focal0 [127 kB] \r\nGet:23 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-rpart 4.1-15-2focal0 [695 kB] \r\nGet:24 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-nnet 7.3-14-1.2004.0 [111 kB] \r\nGet:25 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-nlme 3.1.147-1.2004.0 [2198 kB] \r\nGet:26 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-mgcv 1.8-31-1cran1focal0 [2754 kB] \r\nGet:27 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-mass 7.3-51.6-1.2004.0 [1112 kB] \r\nGet:28 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-kernsmooth 2.23-17-1cran1.2004.0 [88.9 kB] \r\nGet:29 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-foreign 0.8.79-2.2004.0 [238 kB] \r\nGet:30 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-codetools 0.2-16-2.2004.0 [91.1 kB] \r\nGet:31 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-cluster 2.1.0-2focal0 [526 kB] \r\nGet:32 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-class 7.3-17-1.2004.0 [87.7 kB] \r\nGet:33 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-cran-boot 1.3-25-2.2004.0 [616 kB] \r\nGet:34 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-base-core 4.0.1-1.2004.0 [25.1 MB] \r\nGet:35 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-base 4.0.1-1.2004.0 [43.5 kB] \r\nGet:36 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-recommended 4.0.1-1.2004.0 [2772 B] \r\nGet:37 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-base-dev 4.0.1-1.2004.0 [4480 B] \r\nGet:38 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-base-html 4.0.1-1.2004.0 [90.4 kB] \r\nGet:39 https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu focal-cran40\/ r-doc-html 4.0.1-1.2004.0 [565 kB]<\/pre>\n
Cool, so it’s installing the right version of R: 4.X something (4.0.1-1.2004.0, whatever that means, 2004??). Anyway, so we go back into R!:<\/p>\n
R version 4.0.1 (2020-06-06) -- \"See Things Now\"\r\nCopyright (C) 2020 The R Foundation for Statistical Computing\r\nPlatform: x86_64-pc-linux-gnu (64-bit)<\/pre>\n
Hooray! We are now on R 4.0.1, so we should be able to install mnormt<\/strong> package to get psych<\/strong> package. Should! So let’s try:<\/p>\n
> install.packages(\"psych\")\r\nInstalling package into '\/usr\/local\/lib\/R\/site-library'\r\n(as 'lib' is unspecified)\r\nWarning in install.packages(\"psych\") :\r\n'lib = \"\/usr\/local\/lib\/R\/site-library\"' is not writable\r\nWould you like to use a personal library instead? (yes\/No\/cancel) yes\r\nWould you like to create a personal library\r\n'~\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\nto install packages into? (yes\/No\/cancel) yes\r\nalso installing the dependencies 'tmvnsim', 'mnormt'\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tmvnsim_1.0-2.tar.gz'\r\nContent type 'application\/x-gzip' length 6052 bytes\r\n==================================================\r\ndownloaded 6052 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/mnormt_2.0.0.tar.gz'\r\nContent type 'application\/x-gzip' length 48856 bytes (47 KB)\r\n==================================================\r\ndownloaded 47 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/psych_1.9.12.31.tar.gz'\r\nContent type 'application\/x-gzip' length 1724122 bytes (1.6 MB)\r\n==================================================\r\ndownloaded 1.6 MB\r\n\r\n* installing *source* package 'tmvnsim' ...\r\n** package 'tmvnsim' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Fortran2CWrapper.c -o Fortran2CWrapper.o\r\ngfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -c tmvnghk.f90 -o tmvnghk.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tmvnsim.so Fortran2CWrapper.o tmvnghk.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-tmvnsim\/00new\/tmvnsim\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tmvnsim)\r\n* installing *source* package 'mnormt' ...\r\n** package 'mnormt' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -c biv-nt.f -o biv-nt.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mnormt_init.c -o mnormt_init.o\r\ngfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -c sadmvnt.f -o sadmvnt.o\r\ngfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -c tvpack.f -o tvpack.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mnormt.so biv-nt.o mnormt_init.o sadmvnt.o tvpack.o -lgfortran -lm -lquadmath -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-mnormt\/00new\/mnormt\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (mnormt)\r\n* installing *source* package 'psych' ...\r\n** package 'psych' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (psych)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'<\/pre>\n
We can indeed! I wish it gave a less verbose output. The typical user does not care about all this stuff. Default verbosity should be for user, not developers. Anyway, the next hassle is that since we updated R to a new major number, we need to reinstall all the packages. Aaahhhh. So let’s get started with tidyverse<\/strong> package:<\/p>\n
> install.packages(\"tidyverse\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\nalso installing the dependencies 'desc', 'pkgbuild', 'rprojroot', 'pkgload', 'praise', 'colorspace', 'sys', 'ps', 'highr', 'markdown', 'plyr', 'testthat', 'farver', 'labeling', 'munsell', 'RColorBrewer', 'viridisLite', 'askpass', 'rematch', 'prettyunits', 'processx', 'knitr', 'yaml', 'evaluate', 'base64enc', 'tinytex', 'xfun', 'backports', 'generics', 'reshape2', 'assertthat', 'glue', 'fansi', 'DBI', 'lifecycle', 'tidyselect', 'blob', 'ellipsis', 'vctrs', 'gtable', 'isoband', 'scales', 'withr', 'pkgconfig', 'curl', 'openssl', 'utf8', 'clipr', 'cellranger', 'progress', 'callr', 'fs', 'rmarkdown', 'whisker', 'selectr', 'stringi', 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rstudioapi', 'rvest', 'stringr', 'tibble', 'tidyr', 'xml2'\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/desc_1.2.0.tar.gz'\r\nContent type 'application\/x-gzip' length 65612 bytes (64 KB)\r\n==================================================\r\ndownloaded 64 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pkgbuild_1.0.8.tar.gz'\r\nContent type 'application\/x-gzip' length 29485 bytes (28 KB)\r\n==================================================\r\ndownloaded 28 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rprojroot_1.3-2.tar.gz'\r\nContent type 'application\/x-gzip' length 50414 bytes (49 KB)\r\n==================================================\r\ndownloaded 49 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pkgload_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 58046 bytes (56 KB)\r\n==================================================\r\ndownloaded 56 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/praise_1.0.0.tar.gz'\r\nContent type 'application\/x-gzip' length 6100 bytes\r\n==================================================\r\ndownloaded 6100 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/colorspace_1.4-1.tar.gz'\r\nContent type 'application\/x-gzip' length 2152594 bytes (2.1 MB)\r\n==================================================\r\ndownloaded 2.1 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/sys_3.3.tar.gz'\r\nContent type 'application\/x-gzip' length 20225 bytes (19 KB)\r\n==================================================\r\ndownloaded 19 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/ps_1.3.3.tar.gz'\r\nContent type 'application\/x-gzip' length 98973 bytes (96 KB)\r\n==================================================\r\ndownloaded 96 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/highr_0.8.tar.gz'\r\nContent type 'application\/x-gzip' length 17445 bytes (17 KB)\r\n==================================================\r\ndownloaded 17 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/markdown_1.1.tar.gz'\r\nContent type 'application\/x-gzip' length 81050 bytes (79 KB)\r\n==================================================\r\ndownloaded 79 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/plyr_1.8.6.tar.gz'\r\nContent type 'application\/x-gzip' length 401191 bytes (391 KB)\r\n==================================================\r\ndownloaded 391 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/testthat_2.3.2.tar.gz'\r\nContent type 'application\/x-gzip' length 249661 bytes (243 KB)\r\n==================================================\r\ndownloaded 243 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/farver_2.0.3.tar.gz'\r\nContent type 'application\/x-gzip' length 1279579 bytes (1.2 MB)\r\n==================================================\r\ndownloaded 1.2 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/labeling_0.3.tar.gz'\r\nContent type 'application\/x-gzip' length 10722 bytes (10 KB)\r\n==================================================\r\ndownloaded 10 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/munsell_0.5.0.tar.gz'\r\nContent type 'application\/x-gzip' length 182653 bytes (178 KB)\r\n==================================================\r\ndownloaded 178 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/RColorBrewer_1.1-2.tar.gz'\r\nContent type 'application\/x-gzip' length 11532 bytes (11 KB)\r\n==================================================\r\ndownloaded 11 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/viridisLite_0.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 44019 bytes (42 KB)\r\n==================================================\r\ndownloaded 42 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/askpass_1.1.tar.gz'\r\nContent type 'application\/x-gzip' length 5730 bytes\r\n==================================================\r\ndownloaded 5730 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rematch_1.0.1.tar.gz'\r\nContent type 'application\/x-gzip' length 3719 bytes\r\n==================================================\r\ndownloaded 3719 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/prettyunits_1.1.1.tar.gz'\r\nContent type 'application\/x-gzip' length 10366 bytes (10 KB)\r\n==================================================\r\ndownloaded 10 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/processx_3.4.2.tar.gz'\r\nContent type 'application\/x-gzip' length 130148 bytes (127 KB)\r\n==================================================\r\ndownloaded 127 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/knitr_1.28.tar.gz'\r\nContent type 'application\/x-gzip' 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KB)\r\n==================================================\r\ndownloaded 154 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/lubridate_1.7.9.tar.gz'\r\nContent type 'application\/x-gzip' length 467131 bytes (456 KB)\r\n==================================================\r\ndownloaded 456 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/modelr_0.1.8.tar.gz'\r\nContent type 'application\/x-gzip' length 121333 bytes (118 KB)\r\n==================================================\r\ndownloaded 118 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pillar_1.4.4.tar.gz'\r\nContent type 'application\/x-gzip' length 231021 bytes (225 KB)\r\n==================================================\r\ndownloaded 225 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/purrr_0.3.4.tar.gz'\r\nContent type 'application\/x-gzip' length 375062 bytes (366 KB)\r\n==================================================\r\ndownloaded 366 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/readr_1.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 268853 bytes (262 KB)\r\n==================================================\r\ndownloaded 262 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/readxl_1.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 2056165 bytes (2.0 MB)\r\n==================================================\r\ndownloaded 2.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/reprex_0.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 1052597 bytes (1.0 MB)\r\n==================================================\r\ndownloaded 1.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rstudioapi_0.11.tar.gz'\r\nContent type 'application\/x-gzip' length 98082 bytes (95 KB)\r\n==================================================\r\ndownloaded 95 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rvest_0.3.5.tar.gz'\r\nContent type 'application\/x-gzip' length 1129355 bytes (1.1 MB)\r\n==================================================\r\ndownloaded 1.1 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/stringr_1.4.0.tar.gz'\r\nContent type 'application\/x-gzip' length 135777 bytes (132 KB)\r\n==================================================\r\ndownloaded 132 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tibble_3.0.1.tar.gz'\r\nContent type 'application\/x-gzip' length 399191 bytes (389 KB)\r\n==================================================\r\ndownloaded 389 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyr_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 836985 bytes (817 KB)\r\n==================================================\r\ndownloaded 817 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/xml2_1.3.2.tar.gz'\r\nContent type 'application\/x-gzip' length 271876 bytes (265 KB)\r\n==================================================\r\ndownloaded 265 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyverse_1.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 712837 bytes (696 KB)\r\n==================================================\r\ndownloaded 696 KB\r\n\r\n* installing *source* package 'praise' ...\r\n** package 'praise' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (praise)\r\n* installing *source* package 'colorspace' ...\r\n** package 'colorspace' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colorspace.c -o colorspace.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o colorspace.so colorspace.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-colorspace\/00new\/colorspace\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (colorspace)\r\n* installing *source* package 'sys' ...\r\n** package 'sys' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c exec.c -o exec.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sys.so exec.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-sys\/00new\/sys\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (sys)\r\n* installing *source* package 'ps' ...\r\n** package 'ps' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall px.c -o px\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-common.c -o api-common.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.c -o common.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extra.c -o extra.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dummy.c -o dummy.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error-codes.c -o error-codes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c posix.c -o posix.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-posix.c -o api-posix.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c linux.c -o linux.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-linux.c -o api-linux.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling via 'install.libs.R' to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-ps\/00new\/ps\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (ps)\r\n* installing *source* package 'highr' ...\r\n** package 'highr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (highr)\r\n* installing *source* package 'plyr' ...\r\n** package 'plyr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-plyr\/00new\/plyr\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'Rcpp' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'plyr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/plyr'\r\n* installing *source* package 'farver' ...\r\n** package 'farver' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ColorSpace.cpp -o ColorSpace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Comparison.cpp -o Comparison.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Conversion.cpp -o Conversion.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encode.cpp -o encode.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c farver.cpp -o farver.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-farver\/00new\/farver\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (farver)\r\n* installing *source* package 'labeling' ...\r\n** package 'labeling' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (labeling)\r\n* installing *source* package 'RColorBrewer' ...\r\n** package 'RColorBrewer' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (RColorBrewer)\r\n* installing *source* package 'viridisLite' ...\r\n** package 'viridisLite' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (viridisLite)\r\n* installing *source* package 'rematch' ...\r\n** package 'rematch' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rematch)\r\n* installing *source* package 'prettyunits' ...\r\n** package 'prettyunits' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (prettyunits)\r\n* installing *source* package 'yaml' ...\r\n** package 'yaml' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.c -o api.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dumper.c -o dumper.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c emitter.c -o emitter.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c implicit.c -o implicit.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loader.c -o loader.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parser.c -o parser.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_emit.c -o r_emit.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_ext.c -o r_ext.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_parse.c -o r_parse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reader.c -o reader.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanner.c -o scanner.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-yaml\/00new\/yaml\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (yaml)\r\n* installing *source* package 'evaluate' ...\r\n** package 'evaluate' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (evaluate)\r\n* installing *source* package 'base64enc' ...\r\n** package 'base64enc' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uriencode.c -o uriencode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o base64enc.so base64.o uriencode.o utf8.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-base64enc\/00new\/base64enc\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (base64enc)\r\n* installing *source* package 'xfun' ...\r\n** package 'xfun' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (xfun)\r\n* installing *source* package 'backports' ...\r\n** package 'backports' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsElt.c -o dotsElt.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsLength.c -o dotsLength.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o backports.so dotsElt.o dotsLength.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-backports\/00new\/backports\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (backports)\r\n* installing *source* package 'generics' ...\r\n** package 'generics' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (generics)\r\n* installing *source* package 'assertthat' ...\r\n** package 'assertthat' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (assertthat)\r\n* installing *source* package 'glue' ...\r\n** package 'glue' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glue.c -o glue.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o glue.so glue.o init.o trim.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-glue\/00new\/glue\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (glue)\r\n* installing *source* package 'fansi' ...\r\n** package 'fansi' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assumptions.c -o assumptions.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c has.c -o has.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nchar.c -o nchar.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchar.c -o rnchar.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strip.c -o strip.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strsplit.c -o strsplit.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tabs.c -o tabs.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tohtml.c -o tohtml.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unhandled.c -o unhandled.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wrap.c -o wrap.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-fansi\/00new\/fansi\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (fansi)\r\n* installing *source* package 'DBI' ...\r\n** package 'DBI' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (DBI)\r\n* installing *source* package 'ellipsis' ...\r\n** package 'ellipsis' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dots.c -o dots.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ellipsis.so dots.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-ellipsis\/00new\/ellipsis\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'rlang' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'ellipsis'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/ellipsis'\r\n* installing *source* package 'gtable' ...\r\n** package 'gtable' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (gtable)\r\n* installing *source* package 'withr' ...\r\n** package 'withr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (withr)\r\n* installing *source* package 'pkgconfig' ...\r\n** package 'pkgconfig' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (pkgconfig)\r\n* installing *source* package 'curl' ...\r\n** package 'curl' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\nFound pkg-config cflags and libs!\r\nUsing PKG_CFLAGS=-I\/usr\/include\/x86_64-linux-gnu\r\nUsing PKG_LIBS=-lcurl\r\n** libs\r\nrm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbacks.c -o callbacks.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c curl.c -o curl.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c download.c -o download.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape.c -o escape.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fetch.c -o fetch.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c form.c -o form.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getdate.c -o getdate.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c handle.c -o handle.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ieproxy.c -o ieproxy.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interrupt.c -o interrupt.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c multi.c -o multi.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nslookup.c -o nslookup.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reflist.c -o reflist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typechecking.c -o typechecking.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c winidn.c -o winidn.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I\/usr\/include\/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-curl\/00new\/curl\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (curl)\r\n* installing *source* package 'utf8' ...\r\n** package 'utf8' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c as_utf8.c -o as_utf8.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bytes.c -o bytes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render.c -o render.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render_table.c -o render_table.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c string.c -o string.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_encode.c -o utf8_encode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_format.c -o utf8_format.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_normalize.c -o utf8_normalize.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_valid.c -o utf8_valid.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_width.c -o utf8_width.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/array.c -o utf8lite\/src\/array.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/char.c -o utf8lite\/src\/char.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/encode.c -o utf8lite\/src\/encode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/error.c -o utf8lite\/src\/error.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/escape.c -o utf8lite\/src\/escape.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/graph.c -o utf8lite\/src\/graph.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/graphscan.c -o utf8lite\/src\/graphscan.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/normalize.c -o utf8lite\/src\/normalize.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/render.c -o utf8lite\/src\/render.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/text.c -o utf8lite\/src\/text.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/textassign.c -o utf8lite\/src\/textassign.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/textiter.c -o utf8lite\/src\/textiter.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iutf8lite\/src -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite\/src\/textmap.c -o utf8lite\/src\/textmap.o\r\nar rcs libcutf8lite.a utf8lite\/src\/array.o utf8lite\/src\/char.o utf8lite\/src\/encode.o utf8lite\/src\/error.o utf8lite\/src\/escape.o utf8lite\/src\/graph.o utf8lite\/src\/graphscan.o utf8lite\/src\/normalize.o utf8lite\/src\/render.o utf8lite\/src\/text.o utf8lite\/src\/textassign.o utf8lite\/src\/textiter.o utf8lite\/src\/textmap.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-utf8\/00new\/utf8\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (utf8)\r\n* installing *source* package 'clipr' ...\r\n** package 'clipr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (clipr)\r\n* installing *source* package 'fs' ...\r\n** package 'fs' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cc -o init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c id.cc -o id.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cc -o utils.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c file.cc -o file.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c path.cc -o path.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c link.cc -o link.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fs.cc -o fs.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dir.cc -o dir.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getmode.cc -o getmode.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error.cc -o error.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/getmode.cc -o unix\/getmode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd\/setmode.c -o bsd\/setmode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd\/strmode.c -o bsd\/strmode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/libuv\/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd\/reallocarray.c -o bsd\/reallocarray.o\r\n(cd libuv \\\r\n&& CC=\"gcc -std=gnu99\" CFLAGS=\"-g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden\" AR=\"ar\" RANLIB=\"ranlib\" LDFLAGS=\"-Wl,-Bsymbolic-functions -Wl,-z,relro\" .\/configure --quiet)\r\nmake --directory=libuv \\\r\nHAVE_DTRACE=0\r\nmake[1]: Entering directory '\/tmp\/RtmpNUdwBH\/R.INSTALL1aede16805074\/fs\/src\/libuv'\r\nCC src\/libuv_la-fs-poll.lo\r\nCC src\/libuv_la-inet.lo\r\nCC src\/libuv_la-threadpool.lo\r\nCC src\/libuv_la-uv-common.lo\r\nCC src\/libuv_la-version.lo\r\nCC src\/unix\/libuv_la-async.lo\r\nCC src\/unix\/libuv_la-core.lo\r\nCC src\/unix\/libuv_la-dl.lo\r\nCC src\/unix\/libuv_la-fs.lo\r\nCC src\/unix\/libuv_la-getaddrinfo.lo\r\nCC src\/unix\/libuv_la-getnameinfo.lo\r\nCC src\/unix\/libuv_la-loop-watcher.lo\r\nCC src\/unix\/libuv_la-loop.lo\r\nCC src\/unix\/libuv_la-pipe.lo\r\nCC src\/unix\/libuv_la-poll.lo\r\nCC src\/unix\/libuv_la-process.lo\r\nCC src\/unix\/libuv_la-signal.lo\r\nCC src\/unix\/libuv_la-stream.lo\r\nCC src\/unix\/libuv_la-tcp.lo\r\nCC src\/unix\/libuv_la-thread.lo\r\nsrc\/unix\/thread.c: In function 'uv_thread_create':\r\nsrc\/unix\/thread.c:198:35: warning: cast between incompatible function types from 'void (*)(void *)' to 'void * (*)(void *)' [-Wcast-function-type]\r\n198 | err = pthread_create(tid, attr, (void*(*)(void*)) entry, arg);\r\n| ^\r\nCC src\/unix\/libuv_la-timer.lo\r\nCC src\/unix\/libuv_la-tty.lo\r\nCC src\/unix\/libuv_la-udp.lo\r\nCC src\/unix\/libuv_la-linux-core.lo\r\nsrc\/unix\/linux-core.c: In function 'uv__io_poll':\r\nsrc\/unix\/linux-core.c:343:5: warning: converting a packed 'struct uv__epoll_event' pointer (alignment 1) to a 'uv__io_t' {aka 'struct uv__io_s'} pointer (alignment 8) may result in an unaligned pointer value [-Waddress-of-packed-member]\r\n343 | loop->watchers[loop->nwatchers] = (void*) events;\r\n| ^~~~\r\nIn file included from src\/unix\/internal.h:38,\r\nfrom src\/unix\/linux-core.c:27:\r\nsrc\/unix\/linux-syscalls.h:90:8: note: defined here\r\n90 | struct uv__epoll_event {\r\n| ^~~~~~~~~~~~~~~\r\nIn file included from .\/include\/uv.h:62,\r\nfrom src\/unix\/linux-core.c:26:\r\n.\/include\/uv-unix.h:93:8: note: defined here\r\n93 | struct uv__io_s {\r\n| ^~~~~~~~\r\nCC src\/unix\/libuv_la-linux-inotify.lo\r\nCC src\/unix\/libuv_la-linux-syscalls.lo\r\nCC src\/unix\/libuv_la-procfs-exepath.lo\r\nCC src\/unix\/libuv_la-proctitle.lo\r\nCC src\/unix\/libuv_la-sysinfo-loadavg.lo\r\nCC src\/unix\/libuv_la-sysinfo-memory.lo\r\nCCLD libuv.la\r\nar: `u' modifier ignored since `D' is the default (see `U')\r\nmake[1]: Leaving directory '\/tmp\/RtmpNUdwBH\/R.INSTALL1aede16805074\/fs\/src\/libuv'\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fs.so init.o id.o utils.o file.o path.o link.o fs.o dir.o getmode.o error.o unix\/getmode.o bsd\/setmode.o bsd\/strmode.o bsd\/reallocarray.o .\/libuv\/.libs\/libuv.a -pthread -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-fs\/00new\/fs\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (fs)\r\n* installing *source* package 'whisker' ...\r\n** package 'whisker' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (whisker)\r\n* installing *source* package 'stringi' ...\r\n** package 'stringi' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\nchecking for R_HOME... \/usr\/lib\/R\r\nchecking for R... \/usr\/lib\/R\/bin\/R\r\nchecking for endianness... little\r\nchecking for R >= 3.1.0 for C++11 use... yes\r\nchecking for R < 3.4.0 for CXX1X flag use... no\r\nchecking for cat... \/usr\/bin\/cat\r\nchecking for local ICUDT_DIR... icu61\/data\r\nchecking for gcc... gcc -std=gnu99\r\nchecking whether the C compiler works... yes\r\nchecking for C compiler default output file name... a.out\r\nchecking for suffix of executables... \r\nchecking whether we are cross compiling... no\r\nchecking for suffix of object files... o\r\nchecking whether we are using the GNU C compiler... yes\r\nchecking whether gcc -std=gnu99 accepts -g... yes\r\nchecking for gcc -std=gnu99 option to accept ISO C89... none needed\r\nchecking how to run the C preprocessor... gcc -std=gnu99 -E\r\nchecking for grep that handles long lines and -e... \/usr\/bin\/grep\r\nchecking for egrep... \/usr\/bin\/grep -E\r\nchecking for ANSI C header files... yes\r\nchecking for sys\/types.h... yes\r\nchecking for sys\/stat.h... yes\r\nchecking for stdlib.h... yes\r\nchecking for string.h... yes\r\nchecking for memory.h... yes\r\nchecking for strings.h... yes\r\nchecking for inttypes.h... yes\r\nchecking for stdint.h... yes\r\nchecking for unistd.h... yes\r\nchecking elf.h usability... yes\r\nchecking elf.h presence... yes\r\nchecking for elf.h... yes\r\nchecking whether we are using the GNU C++ compiler... yes\r\nchecking whether g++ -std=gnu++11 accepts -g... yes\r\nchecking whether the C++ compiler supports the long long type... yes\r\nchecking whether the compiler implements namespaces... yes\r\nchecking whether the compiler supports Standard Template Library... yes\r\nchecking whether std::map is available... yes\r\nchecking for pkg-config... \/usr\/bin\/pkg-config\r\nchecking with pkg-config for the system ICU4C... 66.1\r\nchecking for ICU4C >= 55... yes\r\nchecking for additional required CPPFLAGS, LDFLAGS, and LIBS... done\r\nchecking whether we may build an ICU4C-based project... yes\r\nchecking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes\r\nchecking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes\r\nchecking for available ICU data library (ucnv, uloc, utrans)... yes\r\nchecking for available ICU data library (ucol)... yes\r\nconfigure: creating .\/config.status\r\nconfig.status: creating src\/Makevars\r\nconfig.status: creating src\/uconfig_local.h\r\nconfig.status: creating src\/install.libs.R\r\n\r\n*** stringi configure summary:\r\nICU_FOUND=1\r\nSTRINGI_CXXSTD=CXX_STD=CXX11\r\nSTRINGI_CFLAGS= -fpic\r\nSTRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H\r\nSTRINGI_CXXFLAGS= -fpic\r\nSTRINGI_LDFLAGS=-L\/usr\/lib\/x86_64-linux-gnu \r\nSTRINGI_LIBS=-licui18n -licuuc -licudata\r\n\r\n*** compiler settings used:\r\nCC=gcc -std=gnu99\r\nLD=g++ -std=gnu++11\r\nCFLAGS=-g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic \r\nCPPFLAGS= -UDEBUG -DNDEBUG\r\nCXX=g++ -std=gnu++11\r\nCXXFLAGS=-g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic \r\nLDFLAGS= \r\nLIBS=\r\n\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listint.cpp -o stri_container_listint.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listraw.cpp -o stri_container_listraw.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listutf8.cpp -o stri_container_listutf8.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_regex.cpp -o stri_container_regex.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_usearch.cpp -o stri_container_usearch.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf16.cpp -o stri_container_utf16.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8.cpp -o stri_container_utf8.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_detection.cpp -o stri_encoding_detection.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_management.cpp -o stri_encoding_management.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_escape.cpp -o stri_escape.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_exception.cpp -o stri_exception.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ICU_settings.cpp -o stri_ICU_settings.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_join.cpp -o stri_join.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_length.cpp -o stri_length.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_pad.cpp -o stri_pad.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_prepare_arg.cpp -o stri_prepare_arg.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_random.cpp -o stri_random.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_reverse.cpp -o stri_reverse.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_count.cpp -o stri_search_class_count.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_detect.cpp -o stri_search_class_detect.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_extract.cpp -o stri_search_class_extract.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_locate.cpp -o stri_search_class_locate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_replace.cpp -o stri_search_class_replace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_split.cpp -o stri_search_class_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_subset.cpp -o stri_search_class_subset.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_trim.cpp -o stri_search_class_trim.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_common.cpp -o stri_search_common.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_count.cpp -o stri_search_coll_count.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_split.cpp -o stri_search_coll_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L\/usr\/lib\/x86_64-linux-gnu -licui18n -licuuc -licudata -L\/usr\/lib\/R\/lib -lR\r\ninstalling via 'install.libs.R' to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-stringi\/00new\/stringi\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (stringi)\r\n* installing *source* package 'purrr' ...\r\n** package 'purrr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c backports.c -o backports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c flatten.c -o flatten.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map.c -o map.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pluck.c -o pluck.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-purrr\/00new\/purrr\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'rlang' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'purrr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/purrr'\r\n* installing *source* package 'rstudioapi' ...\r\n** package 'rstudioapi' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rstudioapi)\r\n* installing *source* package 'xml2' ...\r\n** package 'xml2' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\nFound pkg-config cflags and libs!\r\nUsing PKG_CFLAGS=-I\/usr\/include\/libxml2\r\nUsing PKG_LIBS=-lxml2\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_doc.cpp -o xml2_doc.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_init.cpp -o xml2_init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_namespace.cpp -o xml2_namespace.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_node.cpp -o xml2_node.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_output.cpp -o xml2_output.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_schema.cpp -o xml2_schema.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_url.cpp -o xml2_url.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -I\/usr\/include\/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_xpath.cpp -o xml2_xpath.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-xml2\/00new\/xml2\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (xml2)\r\n* installing *source* package 'rprojroot' ...\r\n** package 'rprojroot' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rprojroot)\r\n* installing *source* package 'markdown' ...\r\n** package 'markdown' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rbase64.c -o Rbase64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmarkdown.c -o Rmarkdown.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autolink.c -o autolink.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.c -o buffer.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_href_e.c -o houdini_href_e.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_html_e.c -o houdini_html_e.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html.c -o html.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html_smartypants.c -o html_smartypants.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markdown.c -o markdown.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stack.c -o stack.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-markdown\/00new\/markdown\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (markdown)\r\n* installing *source* package 'munsell' ...\r\n** package 'munsell' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (munsell)\r\n* installing *source* package 'askpass' ...\r\n** package 'askpass' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c askpass.c -o askpass.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o askpass.so askpass.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-askpass\/00new\/askpass\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (askpass)\r\n* installing *source* package 'processx' ...\r\n** package 'processx' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall tools\/px.c -o tools\/px\r\ngcc -std=gnu99 -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g supervisor\/supervisor.c supervisor\/utils.c \\\r\n-o supervisor\/supervisor\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c client.c -o client.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o\r\ngcc -std=gnu99 -shared -L\"\/usr\/lib\/R\/lib\" -Wl,-Bsymbolic-functions -Wl,-z,relro -o client.so base64.o client.o errors.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poll.c -o poll.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-connection.c -o processx-connection.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-vector.c -o processx-vector.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create-time.c -o create-time.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/childlist.c -o unix\/childlist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/connection.c -o unix\/connection.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/processx.c -o unix\/processx.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/sigchld.c -o unix\/sigchld.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/utils.c -o unix\/utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/named_pipe.c -o unix\/named_pipe.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cleancall.c -o cleancall.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix\/childlist.o unix\/connection.o unix\/processx.o unix\/sigchld.o unix\/utils.o unix\/named_pipe.o cleancall.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling via 'install.libs.R' to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-processx\/00new\/processx\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError : package 'R6' was installed before R 4.0.0: please re-install it\r\nError: unable to load R code in package 'processx'\r\nExecution halted\r\nERROR: lazy loading failed for package 'processx'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/processx'\r\n* installing *source* package 'tinytex' ...\r\n** package 'tinytex' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tinytex)\r\n* installing *source* package 'lifecycle' ...\r\n** package 'lifecycle' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'rlang' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'lifecycle'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/lifecycle'\r\nERROR: dependency 'ellipsis' is not available for package 'vctrs'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/vctrs'\r\n* installing *source* package 'cli' ...\r\n** package 'cli' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'crayon' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'cli'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/cli'\r\n* installing *source* package 'lubridate' ...\r\n** package 'lubridate' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_fixed.cc -o cctz\/src\/time_zone_fixed.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_if.cc -o cctz\/src\/time_zone_if.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_impl.cc -o cctz\/src\/time_zone_impl.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_info.cc -o cctz\/src\/time_zone_info.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_libc.cc -o cctz\/src\/time_zone_libc.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_lookup.cc -o cctz\/src\/time_zone_lookup.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_posix.cc -o cctz\/src\/time_zone_posix.o\r\nar rcs libcctz.a .\/cctz\/src\/time_zone_fixed.o .\/cctz\/src\/time_zone_if.o .\/cctz\/src\/time_zone_impl.o .\/cctz\/src\/time_zone_info.o .\/cctz\/src\/time_zone_libc.o .\/cctz\/src\/time_zone_lookup.o .\/cctz\/src\/time_zone_posix.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c update.cpp -o update.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period.c -o period.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/usr\/local\/lib\/R\/site-library\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tparse.c -o tparse.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-lubridate\/00new\/lubridate\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'Rcpp' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'lubridate'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/lubridate'\r\n* installing *source* package 'stringr' ...\r\n** package 'stringr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'magrittr' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'stringr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/stringr'\r\n* installing *source* package 'desc' ...\r\n** package 'desc' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'R6' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'desc'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/desc'\r\nERROR: dependency 'stringr' is not available for package 'knitr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/knitr'\r\nERROR: dependencies 'plyr', 'stringr' are not available for package 'reshape2'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/reshape2'\r\nERROR: dependencies 'ellipsis', 'purrr', 'vctrs' are not available for package 'tidyselect'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tidyselect'\r\nERROR: dependency 'vctrs' is not available for package 'blob'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/blob'\r\nERROR: dependency 'lifecycle' is not available for package 'scales'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/scales'\r\n* installing *source* package 'openssl' ...\r\n** package 'openssl' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\nFound pkg-config cflags and libs!\r\nUsing PKG_CFLAGS=\r\nUsing PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1\r\n** libs\r\nrm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt\/libstatbcrypt.a bcrypt\/bcrypt_pbkdf.o bcrypt\/blowfish.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bignum.c -o bignum.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cert.c -o cert.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compatibility.c -o compatibility.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diffie.c -o diffie.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envelope.c -o envelope.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error.c -o error.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keygen.c -o keygen.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keys.c -o keys.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c onload.c -o onload.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c openssh.c -o openssh.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c password.c -o password.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbkdf.c -o pbkdf.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pem.c -o pem.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs12.c -o pkcs12.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs7.c -o pkcs7.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rand.c -o rand.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rsa.c -o rsa.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signing.c -o signing.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stream.c -o stream.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x25519.c -o x25519.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bcrypt\/bcrypt_pbkdf.c -o bcrypt\/bcrypt_pbkdf.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bcrypt\/blowfish.c -o bcrypt\/blowfish.o\r\nar rcs bcrypt\/libstatbcrypt.a bcrypt\/bcrypt_pbkdf.o bcrypt\/blowfish.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-openssl\/00new\/openssl\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (openssl)\r\nERROR: dependency 'processx' is not available for package 'callr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/callr'\r\nERROR: dependency 'stringr' is not available for package 'selectr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/selectr'\r\nERROR: dependency 'vctrs' is not available for package 'hms'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/hms'\r\nERROR: dependencies 'cli', 'vctrs' are not available for package 'pillar'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/pillar'\r\nERROR: dependencies 'callr', 'cli', 'desc' are not available for package 'pkgbuild'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/pkgbuild'\r\nERROR: dependency 'hms' is not available for package 'progress'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress'\r\nERROR: dependencies 'knitr', 'stringr' are not available for package 'rmarkdown'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/rmarkdown'\r\n* installing *source* package 'httr' ...\r\n** package 'httr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'R6' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'httr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/httr'\r\nERROR: dependencies 'cli', 'ellipsis', 'lifecycle', 'pillar', 'vctrs' are not available for package 'tibble'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tibble'\r\nERROR: dependencies 'cli', 'desc', 'pkgbuild' are not available for package 'pkgload'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/pkgload'\r\nERROR: dependency 'tibble' is not available for package 'cellranger'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/cellranger'\r\nERROR: dependencies 'ellipsis', 'lifecycle', 'tibble', 'tidyselect', 'vctrs' are not available for package 'dplyr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/dplyr'\r\nERROR: dependencies 'ellipsis', 'tibble' are not available for package 'forcats'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/forcats'\r\nERROR: dependencies 'tibble', 'hms' are not available for package 'readr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/readr'\r\nERROR: dependencies 'callr', 'rmarkdown' are not available for package 'reprex'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/reprex'\r\nERROR: dependencies 'httr', 'selectr' are not available for package 'rvest'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/rvest'\r\nERROR: dependencies 'cli', 'ellipsis', 'pkgload' are not available for package 'testthat'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat'\r\nERROR: dependencies 'dplyr', 'lifecycle', 'purrr', 'tibble', 'tidyselect', 'blob' are not available for package 'dbplyr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/dbplyr'\r\nERROR: dependencies 'forcats', 'hms', 'readr', 'tibble', 'tidyselect', 'vctrs' are not available for package 'haven'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/haven'\r\nERROR: dependencies 'cellranger', 'tibble', 'progress' are not available for package 'readxl'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/readxl'\r\nERROR: dependencies 'dplyr', 'ellipsis', 'purrr', 'tibble', 'tidyselect', 'vctrs', 'lifecycle' are not available for package 'tidyr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tidyr'\r\nERROR: dependency 'testthat' is not available for package 'isoband'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/isoband'\r\nERROR: dependencies 'dplyr', 'purrr', 'reshape2', 'stringr', 'tibble', 'tidyr' are not available for package 'broom'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/broom'\r\nERROR: dependencies 'isoband', 'scales', 'tibble' are not available for package 'ggplot2'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/ggplot2'\r\nERROR: dependencies 'broom', 'purrr', 'tibble', 'tidyr', 'tidyselect', 'vctrs' are not available for package 'modelr'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/modelr'\r\nERROR: dependencies 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rvest', 'stringr', 'tibble', 'tidyr' are not available for package 'tidyverse'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tidyverse'\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\nThere were 41 warnings (use warnings() to see them)<\/pre>\n
You get that? 1610 lines output to install one package and its dependencies (79 packages!), and it even failed in the end. OK, so why did it fail? Is there a list of things to fix in the bottom? Nope, that would be too easy, we have to skim all the lines and find the few relevant parts. If you’re wondering, it’s these (I think!):<\/p>\n
Error: package 'rlang' was installed before R 4.0.0: please re-install it\r\nError : package 'R6' was installed before R 4.0.0: please re-install it\r\nError: package 'crayon' was installed before R 4.0.0: please re-install it\r\nError: package 'Rcpp' was installed before R 4.0.0: please re-install it\r\nError: package 'magrittr' was installed before R 4.0.0: please re-install it<\/pre>\n
(Maybe you are wondering about the extra space in line 2, I don’t know either, it’s in the output.)<\/p>\n
So to find these, I searched the output for “Error” and these seem the most relevant. They are saying that the packages were somehow installed under older R version, despite we just upgrading to R 4.X. That should’t happen because packages are generally installed into a directory that fits the major version. Anyhow, it means we need to reinstall them, and it won’t do it for us. So:<\/p>\n
> install.packages(\"R6\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/R6_2.4.1.tar.gz'\r\nContent type 'application\/x-gzip' length 35536 bytes (34 KB)\r\n==================================================\r\ndownloaded 34 KB\r\n\r\n* installing *source* package 'R6' ...\r\n** package 'R6' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (R6)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\n> install.packages(\"Rcpp\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/Rcpp_1.0.4.6.tar.gz'\r\nContent type 'application\/x-gzip' length 2751467 bytes (2.6 MB)\r\n==================================================\r\ndownloaded 2.6 MB\r\n\r\n* installing *source* package 'Rcpp' ...\r\n** package 'Rcpp' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c date.cpp -o date.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c module.cpp -o module.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include\/ -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcpp_init.cpp -o rcpp_init.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-Rcpp\/00new\/Rcpp\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (Rcpp)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\n> install.packages(\"rlang\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rlang_0.4.6.tar.gz'\r\nContent type 'application\/x-gzip' length 835198 bytes (815 KB)\r\n==================================================\r\ndownloaded 815 KB\r\n\r\n* installing *source* package 'rlang' ...\r\n** package 'rlang' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/lib\/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c capture.c -o capture.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/lib\/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.c -o export.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/lib\/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internal.c -o internal.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/lib\/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lib.c -o lib.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I.\/lib\/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rlang.so capture.o export.o internal.o lib.o version.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-rlang\/00new\/rlang\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rlang)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\n> install.packages(\"crayon\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/crayon_1.3.4.tar.gz'\r\nContent type 'application\/x-gzip' length 658694 bytes (643 KB)\r\n==================================================\r\ndownloaded 643 KB\r\n\r\n* installing *source* package 'crayon' ...\r\n** package 'crayon' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (crayon)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\n> install.packages(\"magrittr\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/magrittr_1.5.tar.gz'\r\nContent type 'application\/x-gzip' length 200504 bytes (195 KB)\r\n==================================================\r\ndownloaded 195 KB\r\n\r\n* installing *source* package 'magrittr' ...\r\n** package 'magrittr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (magrittr)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'<\/pre>\n
(Yes, I did them in the wrong order.)<\/p>\n
Phew, they didn’t give more errors! So, it’s time to try tidyverse<\/strong> again!<\/p>\n
> install.packages(\"tidyverse\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\nalso installing the dependencies 'desc', 'pkgbuild', 'pkgload', 'plyr', 'testthat', 'processx', 'knitr', 'reshape2', 'lifecycle', 'tidyselect', 'blob', 'ellipsis', 'vctrs', 'isoband', 'scales', 'cellranger', 'progress', 'callr', 'rmarkdown', 'selectr', 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rvest', 'stringr', 'tibble', 'tidyr'\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/desc_1.2.0.tar.gz'\r\nContent type 'application\/x-gzip' length 65612 bytes (64 KB)\r\n==================================================\r\ndownloaded 64 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pkgbuild_1.0.8.tar.gz'\r\nContent type 'application\/x-gzip' length 29485 bytes (28 KB)\r\n==================================================\r\ndownloaded 28 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pkgload_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 58046 bytes (56 KB)\r\n==================================================\r\ndownloaded 56 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/plyr_1.8.6.tar.gz'\r\nContent type 'application\/x-gzip' length 401191 bytes (391 KB)\r\n==================================================\r\ndownloaded 391 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/testthat_2.3.2.tar.gz'\r\nContent type 'application\/x-gzip' length 249661 bytes (243 KB)\r\n==================================================\r\ndownloaded 243 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/processx_3.4.2.tar.gz'\r\nContent type 'application\/x-gzip' length 130148 bytes (127 KB)\r\n==================================================\r\ndownloaded 127 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/knitr_1.28.tar.gz'\r\nContent type 'application\/x-gzip' length 884866 bytes (864 KB)\r\n==================================================\r\ndownloaded 864 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/reshape2_1.4.4.tar.gz'\r\nContent type 'application\/x-gzip' length 37307 bytes (36 KB)\r\n==================================================\r\ndownloaded 36 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/lifecycle_0.2.0.tar.gz'\r\nContent type 'application\/x-gzip' length 164455 bytes (160 KB)\r\n==================================================\r\ndownloaded 160 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyselect_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 90842 bytes (88 KB)\r\n==================================================\r\ndownloaded 88 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/blob_1.2.1.tar.gz'\r\nContent type 'application\/x-gzip' length 10099 bytes\r\n==================================================\r\ndownloaded 10099 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/ellipsis_0.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 7582 bytes\r\n==================================================\r\ndownloaded 7582 bytes\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/vctrs_0.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 946964 bytes (924 KB)\r\n==================================================\r\ndownloaded 924 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/isoband_0.2.1.tar.gz'\r\nContent type 'application\/x-gzip' length 2293333 bytes (2.2 MB)\r\n==================================================\r\ndownloaded 2.2 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/scales_1.1.1.tar.gz'\r\nContent type 'application\/x-gzip' length 515201 bytes (503 KB)\r\n==================================================\r\ndownloaded 503 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/cellranger_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 63857 bytes (62 KB)\r\n==================================================\r\ndownloaded 62 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/progress_1.2.2.tar.gz'\r\nContent type 'application\/x-gzip' length 29506 bytes (28 KB)\r\n==================================================\r\ndownloaded 28 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/callr_3.4.3.tar.gz'\r\nContent type 'application\/x-gzip' length 85802 bytes (83 KB)\r\n==================================================\r\ndownloaded 83 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rmarkdown_2.2.tar.gz'\r\nContent type 'application\/x-gzip' length 3192895 bytes (3.0 MB)\r\n==================================================\r\ndownloaded 3.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/selectr_0.4-2.tar.gz'\r\nContent type 'application\/x-gzip' length 41371 bytes (40 KB)\r\n==================================================\r\ndownloaded 40 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/broom_0.5.6.tar.gz'\r\nContent type 'application\/x-gzip' length 1221466 bytes (1.2 MB)\r\n==================================================\r\ndownloaded 1.2 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/cli_2.0.2.tar.gz'\r\nContent type 'application\/x-gzip' length 116357 bytes (113 KB)\r\n==================================================\r\ndownloaded 113 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/dbplyr_1.4.4.tar.gz'\r\nContent type 'application\/x-gzip' length 426749 bytes (416 KB)\r\n==================================================\r\ndownloaded 416 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/dplyr_1.0.0.tar.gz'\r\nContent type 'application\/x-gzip' length 836651 bytes (817 KB)\r\n==================================================\r\ndownloaded 817 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/forcats_0.5.0.tar.gz'\r\nContent type 'application\/x-gzip' length 257126 bytes (251 KB)\r\n==================================================\r\ndownloaded 251 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/ggplot2_3.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 3035612 bytes (2.9 MB)\r\n==================================================\r\ndownloaded 2.9 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/haven_2.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 277509 bytes (271 KB)\r\n==================================================\r\ndownloaded 271 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/hms_0.5.3.tar.gz'\r\nContent type 'application\/x-gzip' length 134669 bytes (131 KB)\r\n==================================================\r\ndownloaded 131 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/httr_1.4.1.tar.gz'\r\nContent type 'application\/x-gzip' length 158465 bytes (154 KB)\r\n==================================================\r\ndownloaded 154 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/lubridate_1.7.9.tar.gz'\r\nContent type 'application\/x-gzip' length 467131 bytes (456 KB)\r\n==================================================\r\ndownloaded 456 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/modelr_0.1.8.tar.gz'\r\nContent type 'application\/x-gzip' length 121333 bytes (118 KB)\r\n==================================================\r\ndownloaded 118 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/pillar_1.4.4.tar.gz'\r\nContent type 'application\/x-gzip' length 231021 bytes (225 KB)\r\n==================================================\r\ndownloaded 225 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/purrr_0.3.4.tar.gz'\r\nContent type 'application\/x-gzip' length 375062 bytes (366 KB)\r\n==================================================\r\ndownloaded 366 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/readr_1.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 268853 bytes (262 KB)\r\n==================================================\r\ndownloaded 262 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/readxl_1.3.1.tar.gz'\r\nContent type 'application\/x-gzip' length 2056165 bytes (2.0 MB)\r\n==================================================\r\ndownloaded 2.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/reprex_0.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 1052597 bytes (1.0 MB)\r\n==================================================\r\ndownloaded 1.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rvest_0.3.5.tar.gz'\r\nContent type 'application\/x-gzip' length 1129355 bytes (1.1 MB)\r\n==================================================\r\ndownloaded 1.1 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/stringr_1.4.0.tar.gz'\r\nContent type 'application\/x-gzip' length 135777 bytes (132 KB)\r\n==================================================\r\ndownloaded 132 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tibble_3.0.1.tar.gz'\r\nContent type 'application\/x-gzip' length 399191 bytes (389 KB)\r\n==================================================\r\ndownloaded 389 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyr_1.1.0.tar.gz'\r\nContent type 'application\/x-gzip' length 836985 bytes (817 KB)\r\n==================================================\r\ndownloaded 817 KB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyverse_1.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 712837 bytes (696 KB)\r\n==================================================\r\ndownloaded 696 KB\r\n\r\n* installing *source* package 'desc' ...\r\n** package 'desc' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (desc)\r\n* installing *source* package 'plyr' ...\r\n** package 'plyr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-plyr\/00new\/plyr\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (plyr)\r\n* installing *source* package 'processx' ...\r\n** package 'processx' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall tools\/px.c -o tools\/px\r\ngcc -std=gnu99 -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g supervisor\/supervisor.c supervisor\/utils.c \\\r\n-o supervisor\/supervisor\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c client.c -o client.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o\r\ngcc -std=gnu99 -shared -L\"\/usr\/lib\/R\/lib\" -Wl,-Bsymbolic-functions -Wl,-z,relro -o client.so base64.o client.o errors.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poll.c -o poll.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-connection.c -o processx-connection.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-vector.c -o processx-vector.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create-time.c -o create-time.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/childlist.c -o unix\/childlist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/connection.c -o unix\/connection.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/processx.c -o unix\/processx.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/sigchld.c -o unix\/sigchld.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/utils.c -o unix\/utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix\/named_pipe.c -o unix\/named_pipe.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cleancall.c -o cleancall.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix\/childlist.o unix\/connection.o unix\/processx.o unix\/sigchld.o unix\/utils.o unix\/named_pipe.o cleancall.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling via 'install.libs.R' to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-processx\/00new\/processx\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (processx)\r\n* installing *source* package 'lifecycle' ...\r\n** package 'lifecycle' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (lifecycle)\r\n* installing *source* package 'ellipsis' ...\r\n** package 'ellipsis' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dots.c -o dots.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ellipsis.so dots.o init.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-ellipsis\/00new\/ellipsis\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (ellipsis)\r\n* installing *source* package 'cli' ...\r\n** package 'cli' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (cli)\r\n* installing *source* package 'httr' ...\r\n** package 'httr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (httr)\r\n* installing *source* package 'lubridate' ...\r\n** package 'lubridate' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_fixed.cc -o cctz\/src\/time_zone_fixed.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_if.cc -o cctz\/src\/time_zone_if.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_impl.cc -o cctz\/src\/time_zone_impl.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_info.cc -o cctz\/src\/time_zone_info.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_libc.cc -o cctz\/src\/time_zone_libc.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_lookup.cc -o cctz\/src\/time_zone_lookup.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz\/src\/time_zone_posix.cc -o cctz\/src\/time_zone_posix.o\r\nar rcs libcctz.a .\/cctz\/src\/time_zone_fixed.o .\/cctz\/src\/time_zone_if.o .\/cctz\/src\/time_zone_impl.o .\/cctz\/src\/time_zone_info.o .\/cctz\/src\/time_zone_libc.o .\/cctz\/src\/time_zone_lookup.o .\/cctz\/src\/time_zone_posix.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c update.cpp -o update.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period.c -o period.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I. -I.\/cctz\/include\/ -I.\/cctz\/src\/ -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tparse.c -o tparse.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-lubridate\/00new\/lubridate\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (lubridate)\r\n* installing *source* package 'purrr' ...\r\n** package 'purrr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c backports.c -o backports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c flatten.c -o flatten.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map.c -o map.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pluck.c -o pluck.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-purrr\/00new\/purrr\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (purrr)\r\n* installing *source* package 'stringr' ...\r\n** package 'stringr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (stringr)\r\n* installing *source* package 'knitr' ...\r\n** package 'knitr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (knitr)\r\n* installing *source* package 'reshape2' ...\r\n** package 'reshape2' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o reshape2.so RcppExports.o melt.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-reshape2\/00new\/reshape2\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (reshape2)\r\n* installing *source* package 'vctrs' ...\r\n** package 'vctrs' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altrep-rle.c -o altrep-rle.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arg-counter.c -o arg-counter.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arg.c -o arg.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c c-unchop.c -o c-unchop.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c c.c -o c.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callables.c -o callables.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast-bare.c -o cast-bare.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast-dispatch.c -o cast-dispatch.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast.c -o cast.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compare.c -o compare.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dictionary.c -o dictionary.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dim.c -o dim.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c equal.c -o equal.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fields.c -o fields.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group.c -o group.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c growable.c -o growable.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c proxy-restore.c -o proxy-restore.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c proxy.c -o proxy.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptype2-dispatch.c -o ptype2-dispatch.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rep.c -o rep.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shape.c -o shape.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size-common.c -o size-common.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-array.c -o slice-array.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-assign-array.c -o slice-assign-array.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-assign.c -o slice-assign.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-chop.c -o slice-chop.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice.c -o slice.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript-loc.c -o subscript-loc.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-data-frame.c -o type-data-frame.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-date-time.c -o type-date-time.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-factor.c -o type-factor.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-info.c -o type-info.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-tibble.c -o type-tibble.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type.c -o type.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type2.c -o type2.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typeof2-s3.c -o typeof2-s3.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typeof2.c -o typeof2.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unspecified.c -o unspecified.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils-dispatch.c -o utils-dispatch.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o conditions.o dictionary.o dim.o equal.o fields.o group.o growable.o hash.o init.o names.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o version.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-vctrs\/00new\/vctrs\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (vctrs)\r\n* installing *source* package 'scales' ...\r\n** package 'scales' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (scales)\r\n* installing *source* package 'callr' ...\r\n** package 'callr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (callr)\r\n* installing *source* package 'selectr' ...\r\n** package 'selectr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (selectr)\r\n* installing *source* package 'pkgbuild' ...\r\n** package 'pkgbuild' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (pkgbuild)\r\n* installing *source* package 'tidyselect' ...\r\n** package 'tidyselect' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tidyselect)\r\n* installing *source* package 'blob' ...\r\n** package 'blob' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (blob)\r\n* installing *source* package 'rmarkdown' ...\r\n** package 'rmarkdown' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'htmltools' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'rmarkdown'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/rmarkdown'\r\n* installing *source* package 'hms' ...\r\n** package 'hms' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (hms)\r\n* installing *source* package 'pillar' ...\r\n** package 'pillar' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (pillar)\r\n* installing *source* package 'rvest' ...\r\n** package 'rvest' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rvest)\r\n* installing *source* package 'pkgload' ...\r\n** package 'pkgload' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unlock.c -o unlock.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o pkgload.so unlock.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-pkgload\/00new\/pkgload\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (pkgload)\r\n* installing *source* package 'progress' ...\r\n** package 'progress' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (progress)\r\nERROR: dependency 'rmarkdown' is not available for package 'reprex'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/reprex'\r\n* installing *source* package 'tibble' ...\r\n** package 'tibble' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.c -o attributes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrixToDataFrame.c -o matrixToDataFrame.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-tibble\/00new\/tibble\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tibble)\r\n* installing *source* package 'testthat' ...\r\n** package 'testthat' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-catch.cpp -o test-catch.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-example.cpp -o test-example.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I..\/inst\/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-testthat\/00new\/testthat\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (testthat)\r\n* installing *source* package 'cellranger' ...\r\n** package 'cellranger' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (cellranger)\r\n* installing *source* package 'dplyr' ...\r\n** package 'dplyr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.cpp -o filter.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c funs.cpp -o funs.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_by.cpp -o group_by.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_data.cpp -o group_data.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imports.cpp -o imports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mutate.cpp -o mutate.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice.cpp -o slice.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summarise.cpp -o summarise.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dplyr.so filter.o funs.o group_by.o group_data.o imports.o init.o mutate.o slice.o summarise.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-dplyr\/00new\/dplyr\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (dplyr)\r\n* installing *source* package 'forcats' ...\r\n** package 'forcats' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (forcats)\r\n* installing *source* package 'readr' ...\r\n** package 'readr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Collector.cpp -o Collector.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CollectorGuess.cpp -o CollectorGuess.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Iconv.cpp -o Iconv.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LocaleInfo.cpp -o LocaleInfo.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Reader.cpp -o Reader.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Source.cpp -o Source.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Tokenizer.cpp -o Tokenizer.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerDelim.cpp -o TokenizerDelim.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerFwf.cpp -o TokenizerFwf.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerWs.cpp -o TokenizerWs.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.cpp -o datetime.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grisu3.c -o grisu3.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localtime.c -o localtime.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.cpp -o parse.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.cpp -o read.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type_convert.cpp -o type_convert.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.cpp -o write.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write_connection.cpp -o write_connection.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write_delim.cpp -o write_delim.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/usr\/local\/lib\/R\/site-library\/BH\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcon\/connection.c -o rcon\/connection.o\r\nmkdir -p ..\/inst\/rcon\r\ng++ -std=gnu++11 -shared -L\"\/usr\/lib\/R\/lib\" -Wl,-Bsymbolic-functions -Wl,-z,relro -o ..\/inst\/rcon\/librcon.so rcon\/connection.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o RcppExports.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o datetime.o grisu3.o init.o localtime.o parse.o read.o type_convert.o write.o write_connection.o write_delim.o -L. -lrcon -L..\/inst\/rcon -Wl,-rpath,$ORIGIN\/..\/rcon -L\/usr\/lib\/R\/lib -lR\r\ninstalling via 'install.libs.R' to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-readr\/00new\/readr\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (readr)\r\n* installing *source* package 'isoband' ...\r\n** package 'isoband' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clip-lines.cpp -o clip-lines.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoband.cpp -o isoband.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygon.cpp -o polygon.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c separate-polygons.cpp -o separate-polygons.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-clip-lines.cpp -o test-clip-lines.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/testthat\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-separate-polygons.cpp -o test-separate-polygons.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o isoband.so RcppExports.o clip-lines.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-isoband\/00new\/isoband\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (isoband)\r\n* installing *source* package 'dbplyr' ...\r\n** package 'dbplyr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (dbplyr)\r\n* installing *source* package 'haven' ...\r\n** package 'haven' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tagged_na.c -o tagged_na.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_parser.c -o readstat\/readstat_parser.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_bits.c -o readstat\/readstat_bits.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_metadata.c -o readstat\/readstat_metadata.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_io_unistd.c -o readstat\/readstat_io_unistd.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_variable.c -o readstat\/readstat_variable.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_writer.c -o readstat\/readstat_writer.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_error.c -o readstat\/readstat_error.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_convert.c -o readstat\/readstat_convert.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/CKHashTable.c -o readstat\/CKHashTable.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_malloc.c -o readstat\/readstat_malloc.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/readstat_value.c -o readstat\/readstat_value.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_xport_write.c -o readstat\/sas\/readstat_xport_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas7bcat_read.c -o readstat\/sas\/readstat_sas7bcat_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas7bdat_write.c -o readstat\/sas\/readstat_sas7bdat_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas7bcat_write.c -o readstat\/sas\/readstat_sas7bcat_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/ieee.c -o readstat\/sas\/ieee.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_xport_read.c -o readstat\/sas\/readstat_xport_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas.c -o readstat\/sas\/readstat_sas.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas_rle.c -o readstat\/sas\/readstat_sas_rle.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_xport.c -o readstat\/sas\/readstat_xport.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/sas\/readstat_sas7bdat_read.c -o readstat\/sas\/readstat_sas7bdat_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav_compress.c -o readstat\/spss\/readstat_sav_compress.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_spss_parse.c -o readstat\/spss\/readstat_spss_parse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav_read.c -o readstat\/spss\/readstat_sav_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_por_read.c -o readstat\/spss\/readstat_por_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav.c -o readstat\/spss\/readstat_sav.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_por.c -o readstat\/spss\/readstat_por.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav_parse_timestamp.c -o readstat\/spss\/readstat_sav_parse_timestamp.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_zsav_read.c -o readstat\/spss\/readstat_zsav_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav_write.c -o readstat\/spss\/readstat_sav_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_zsav_compress.c -o readstat\/spss\/readstat_zsav_compress.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_por_write.c -o readstat\/spss\/readstat_por_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_spss.c -o readstat\/spss\/readstat_spss.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_zsav_write.c -o readstat\/spss\/readstat_zsav_write.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_sav_parse.c -o readstat\/spss\/readstat_sav_parse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/spss\/readstat_por_parse.c -o readstat\/spss\/readstat_por_parse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/stata\/readstat_dta_read.c -o readstat\/stata\/readstat_dta_read.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/stata\/readstat_dta.c -o readstat\/stata\/readstat_dta.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/stata\/readstat_dta_parse_timestamp.c -o readstat\/stata\/readstat_dta_parse_timestamp.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat\/stata\/readstat_dta_write.c -o readstat\/stata\/readstat_dta_write.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DfReader.cpp -o DfReader.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DfWriter.cpp -o DfWriter.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c haven_types.cpp -o haven_types.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o haven.so tagged_na.o readstat\/readstat_parser.o readstat\/readstat_bits.o readstat\/readstat_metadata.o readstat\/readstat_io_unistd.o readstat\/readstat_variable.o readstat\/readstat_writer.o readstat\/readstat_error.o readstat\/readstat_convert.o readstat\/CKHashTable.o readstat\/readstat_malloc.o readstat\/readstat_value.o readstat\/sas\/readstat_xport_write.o readstat\/sas\/readstat_sas7bcat_read.o readstat\/sas\/readstat_sas7bdat_write.o readstat\/sas\/readstat_sas7bcat_write.o readstat\/sas\/ieee.o readstat\/sas\/readstat_xport_read.o readstat\/sas\/readstat_sas.o readstat\/sas\/readstat_sas_rle.o readstat\/sas\/readstat_xport.o readstat\/sas\/readstat_sas7bdat_read.o readstat\/spss\/readstat_sav_compress.o readstat\/spss\/readstat_spss_parse.o readstat\/spss\/readstat_sav_read.o readstat\/spss\/readstat_por_read.o readstat\/spss\/readstat_sav.o readstat\/spss\/readstat_por.o readstat\/spss\/readstat_sav_parse_timestamp.o readstat\/spss\/readstat_zsav_read.o readstat\/spss\/readstat_sav_write.o readstat\/spss\/readstat_zsav_compress.o readstat\/spss\/readstat_por_write.o readstat\/spss\/readstat_spss.o readstat\/spss\/readstat_zsav_write.o readstat\/spss\/readstat_sav_parse.o readstat\/spss\/readstat_por_parse.o readstat\/stata\/readstat_dta_read.o readstat\/stata\/readstat_dta.o readstat\/stata\/readstat_dta_parse_timestamp.o readstat\/stata\/readstat_dta_write.o DfReader.o DfWriter.o haven_types.o RcppExports.o -lz -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-haven\/00new\/haven\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (haven)\r\n* installing *source* package 'readxl' ...\r\n** package 'readxl' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsWorkBook.cpp -o XlsWorkBook.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsWorkSheet.cpp -o XlsWorkSheet.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsxWorkBook.cpp -o XlsxWorkBook.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsxWorkSheet.cpp -o XlsxWorkSheet.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cran.c -o cran.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c endian.c -o endian.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ole.c -o ole.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xls.c -o xls.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xlstool.c -o xlstool.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/progress\/include' -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zip.cpp -o zip.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o readxl.so RcppExports.o XlsWorkBook.o XlsWorkSheet.o XlsxWorkBook.o XlsxWorkSheet.o cran.o endian.o ole.o xls.o xlstool.o zip.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-readxl\/00new\/readxl\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (readxl)\r\n* installing *source* package 'tidyr' ...\r\n** package 'tidyr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fill.cpp -o fill.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simplifyPieces.cpp -o simplifyPieces.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyr.so RcppExports.o fill.o melt.o simplifyPieces.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-tidyr\/00new\/tidyr\/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tidyr)\r\n* installing *source* package 'broom' ...\r\n** package 'broom' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (broom)\r\n* installing *source* package 'ggplot2' ...\r\n** package 'ggplot2' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (ggplot2)\r\n* installing *source* package 'modelr' ...\r\n** package 'modelr' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (modelr)\r\nERROR: dependency 'reprex' is not available for package 'tidyverse'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tidyverse'\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\nWarning messages:\r\n1: In install.packages(\"tidyverse\") :\r\ninstallation of package 'rmarkdown' had non-zero exit status\r\n2: In install.packages(\"tidyverse\") :\r\ninstallation of package 'reprex' had non-zero exit status\r\n3: In install.packages(\"tidyverse\") :\r\ninstallation of package 'tidyverse' had non-zero exit status<\/pre>\n
Only 1066 lines this time! And only 41 package dependencies! And 1 new error:<\/p>\n
Error: package 'htmltools' was installed before R 4.0.0: please re-install it<\/pre>\n
Alright, so more\u00a0 stuff like above, we repeat:<\/p>\n
> install.packages(\"htmltools\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/htmltools_0.4.0.tar.gz'\r\nContent type 'application\/x-gzip' length 52542 bytes (51 KB)\r\n==================================================\r\ndownloaded 51 KB\r\n\r\n* installing *source* package 'htmltools' ...\r\n** package 'htmltools' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-htmltools\/00new\/htmltools\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'digest' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'htmltools'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/htmltools'\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\nWarning message:\r\nIn install.packages(\"htmltools\") :\r\ninstallation of package 'htmltools' had non-zero exit status<\/pre>\n
They really like this error. OK, we do this digest<\/strong> package first then…<\/p>\n
> install.packages(\"digest\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/digest_0.6.25.tar.gz'\r\nContent type 'application\/x-gzip' length 145642 bytes (142 KB)\r\n==================================================\r\ndownloaded 142 KB\r\n\r\n* installing *source* package 'digest' ...\r\n** package 'digest' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SpookyV2.cpp -o SpookyV2.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c crc32.c -o crc32.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c digest.c -o digest.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c digest2int.c -o digest2int.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmurhash.c -o pmurhash.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raes.c -o raes.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha1.c -o sha1.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha2.c -o sha2.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha256.c -o sha256.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c spooky_serialize.cpp -o spooky_serialize.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xxhash.c -o xxhash.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o digest.so SpookyV2.o aes.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-digest\/00new\/digest\/libs\r\n** R\r\n** demo\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (digest)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'<\/pre>\n
And back to htmltools<\/strong>…<\/p>\n
> install.packages(\"htmltools\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/htmltools_0.4.0.tar.gz'\r\nContent type 'application\/x-gzip' length 52542 bytes (51 KB)\r\n==================================================\r\ndownloaded 51 KB\r\n\r\n* installing *source* package 'htmltools' ...\r\n** package 'htmltools' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o\r\ng++ -std=gnu++11 -I\"\/usr\/share\/R\/include\" -DNDEBUG -I'\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/Rcpp\/include' -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o\r\ng++ -std=gnu++11 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-htmltools\/00new\/htmltools\/libs\r\n** R\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (htmltools)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'<\/pre>\n
Yay! So, tidyverse<\/strong>, 3rd attempt!<\/p>\n
> install.packages(\"tidyverse\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\nalso installing the dependencies 'rmarkdown', 'reprex'\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/rmarkdown_2.2.tar.gz'\r\nContent type 'application\/x-gzip' length 3192895 bytes (3.0 MB)\r\n==================================================\r\ndownloaded 3.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/reprex_0.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 1052597 bytes (1.0 MB)\r\n==================================================\r\ndownloaded 1.0 MB\r\n\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyverse_1.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 712837 bytes (696 KB)\r\n==================================================\r\ndownloaded 696 KB\r\n\r\n* installing *source* package 'rmarkdown' ...\r\n** package 'rmarkdown' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (rmarkdown)\r\n* installing *source* package 'reprex' ...\r\n** package 'reprex' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (reprex)\r\n* installing *source* package 'tidyverse' ...\r\n** package 'tidyverse' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\nError: package 'jsonlite' was installed before R 4.0.0: please re-install it\r\nExecution halted\r\nERROR: lazy loading failed for package 'tidyverse'\r\n* removing '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/tidyverse'\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\nWarning message:\r\nIn install.packages(\"tidyverse\") :\r\ninstallation of package 'tidyverse' had non-zero exit status<\/pre>\n
Yet another sneaky one, alright, jsonlite<\/strong> package, you are up:<\/p>\n
> install.packages(\"jsonlite\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/jsonlite_1.6.1.tar.gz'\r\nContent type 'application\/x-gzip' length 1057910 bytes (1.0 MB)\r\n==================================================\r\ndownloaded 1.0 MB\r\n\r\n* installing *source* package 'jsonlite' ...\r\n** package 'jsonlite' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** libs\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl.c -o yajl\/yajl.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_alloc.c -o yajl\/yajl_alloc.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_buf.c -o yajl\/yajl_buf.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_encode.c -o yajl\/yajl_encode.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_gen.c -o yajl\/yajl_gen.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_lex.c -o yajl\/yajl_lex.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_parser.c -o yajl\/yajl_parser.o\r\ngcc -std=gnu99 -I\"\/usr\/share\/R\/include\" -DNDEBUG -Iyajl\/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=\/build\/r-base-dEscXG\/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl\/yajl_tree.c -o yajl\/yajl_tree.o\r\nar rcs yajl\/libstatyajl.a yajl\/yajl.o yajl\/yajl_alloc.o yajl\/yajl_buf.o yajl\/yajl_encode.o yajl\/yajl_gen.o yajl\/yajl_lex.o yajl\/yajl_parser.o yajl\/yajl_tree.o\r\ngcc -std=gnu99 -shared -L\/usr\/lib\/R\/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L\/usr\/lib\/R\/lib -lR\r\ninstalling to \/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0\/00LOCK-jsonlite\/00new\/jsonlite\/libs\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** checking absolute paths in shared objects and dynamic libraries\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (jsonlite)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'<\/pre>\n
Aaaaand, back to tidyverse<\/strong>, 4th try:<\/p>\n
> install.packages(\"tidyverse\")\r\nInstalling package into '\/home\/shiny\/R\/x86_64-pc-linux-gnu-library\/4.0'\r\n(as 'lib' is unspecified)\r\ntrying URL 'https:\/\/cloud.r-project.org\/src\/contrib\/tidyverse_1.3.0.tar.gz'\r\nContent type 'application\/x-gzip' length 712837 bytes (696 KB)\r\n==================================================\r\ndownloaded 696 KB\r\n\r\n* installing *source* package 'tidyverse' ...\r\n** package 'tidyverse' successfully unpacked and MD5 sums checked\r\n** using staged installation\r\n** R\r\n** inst\r\n** byte-compile and prepare package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** installing vignettes\r\n** testing if installed package can be loaded from temporary location\r\n** testing if installed package can be loaded from final location\r\n** testing if installed package keeps a record of temporary installation path\r\n* DONE (tidyverse)\r\n\r\nThe downloaded source packages are in\r\n'\/tmp\/Rtmps3WHYC\/downloaded_packages'\r\n> library(tidyverse)\r\n-- Attaching packages --------------------------------------- tidyverse 1.3.0 --\r\nv ggplot2 3.3.1 v purrr 0.3.4\r\nv tibble 3.0.1 v dplyr 1.0.0\r\nv tidyr 1.1.0 v stringr 1.4.0\r\nv readr 1.3.1 v forcats 0.5.0\r\n-- Conflicts ------------------------------------------ tidyverse_conflicts() --\r\nx dplyr::filter() masks stats::filter()\r\nx dplyr::lag() masks stats::lag()<\/pre>\n
It’s alive! We loaded it just to be really sure.<\/p>\n
This concludes the exercise. No doubt, some of the additional packages will present some more funny errors.<\/p>\n
(In point of fact, I then tried to install some more packages, and had to go through this pattern another 5 times.)<\/p>\n
(For those who complain, this is just tidyverse<\/strong>, not R base! That’s true but R base sucks, so I am mentally treating them as one unit for the purposes of doing anything in R.)<\/p>\n
\"\"<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"
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