Semi-related

Here’s a whiny post on annoying R features. I love R and all, but it’s obnoxious to install. Not only does it take a long time to compile so many packages, this step typically has to be repeated a few times due to unforeseeable errors. These errors are typically also hard to find, one has to skim the super long install log in the console to find the 1-3 relevant lines. Here’s a concrete example.

I am installing R on a new Ubuntu 20.04 VPS. First, I install the stuff I want, but it turns out some packages on CRAN have already moved to requiring R > 4.0, meaning that the default R version in Ubuntu 20.04 (released in April 2020!) is already outdated to the point of being broken. Such is life in the R community. To get specific, I was trying to install psych package, which depends on mnormt package, and that package has moved to requiring R > 4.0 already. However, psych hasn’t, so trying to install psych results in missing and uninstallable dependencies. Cryptic error for novice users.

> install.packages("psych")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/3.6'
(as 'lib' is unspecified)
Warning: dependency 'mnormt' is not available
trying URL 'https://cloud.r-project.org/src/contrib/psych_1.9.12.31.tar.gz'
Content type 'application/x-gzip' length 1724122 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

ERROR: dependency 'mnormt' is not available for package 'psych'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/3.6/psych'

The downloaded source packages are in
	'/tmp/RtmpUWpHw0/downloaded_packages'
Warning message:
In install.packages("psych") :
  installation of package 'psych' had non-zero exit status
> install.packages("mnormt")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/3.6'
(as 'lib' is unspecified)
Warning message:
package 'mnormt' is not available (for R version 3.6.3)

OK, I looked at CRAN page and realized the R 4.0 issue. But to do that, one has to know to look for the initial lines when starting R:

R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

OK, no problem, we go to the Ubuntu page for R CRAN (https://cran.r-project.org/bin/linux/ubuntu/), and we find the apt source line we need to add. This one has to fit the version of Ubuntu. If you are running some Ubuntu spin-off, like Linux Mint, you need to first check which version of Ubuntu it is based on (it’s the last LTS). For instance, if we are wondering about Mint 19.3 Tricia, we go to the Mint website, and find the release notes, and somewhere in there it says:

Other issues

Linux Mint 19.3 is based on Ubuntu 18.04. Make sure to read the Ubuntu release notes.

Right, so it’s Ubuntu 18.04. And, what is the name of that one? The sources on CRAN site does not use the version numbers, they use the release names. OK, so we look up Ubuntu release names: https://wiki.ubuntu.com/Releases. They have a table like this:

So if we are working with Mint 19.3, we need to look at Ubuntu 18.04, which is “Bionic Beaver” (what even is that?). So “Bionic” is the release name. For the server, however, it’s Ubuntu 20.04, so it’s “Focal Fossa” we are looking for (apparently a weird cat-creature). Back to the server, we then add the right source to the sources.list file:

deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/

(This line says something about “cran40”, which I guess means R 4.0 CRAN version, and it says “focal”, like the name above for Ubuntu 20.04.)

And then we update! Except we don’t because:

root@small-services:/srv/shiny-server/apps/ceiling_effects# apt update
Hit:1 https://repos.insights.digitalocean.com/apt/do-agent main InRelease
Get:2 http://mirrors.digitalocean.com/ubuntu focal InRelease [265 kB] 
Get:3 http://security.ubuntu.com/ubuntu focal-security InRelease [107 kB] 
Get:4 http://mirrors.digitalocean.com/ubuntu focal-updates InRelease [107 kB] 
Get:5 http://mirrors.digitalocean.com/ubuntu focal-backports InRelease [98.3 kB] 
Get:6 http://mirrors.digitalocean.com/ubuntu focal-updates/main amd64 Packages [190 kB] 
Get:7 http://mirrors.digitalocean.com/ubuntu focal-updates/universe amd64 Packages [106 kB] 
Get:8 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease [3622 B] 
Err:8 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease
The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
Reading package lists... Done
W: GPG error: https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
E: The repository 'https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease' is not signed.
N: Updating from such a repository can't be done securely, and is therefore disabled by default.
N: See apt-secure(8) manpage for repository creation and user configuration details.

Ahhhh, so it’s “not signed”. We need to import some … signing or something like that. Back to the CRAN site, we find mentioned further down, something about keys, so we try one of these commands…:

root@small-services:/srv/shiny-server/apps/ceiling_effects# sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
Executing: /tmp/apt-key-gpghome.Ap4Kh9mDsS/gpg.1.sh --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
gpg: key 51716619E084DAB9: public key "Michael Rutter <marutter@gmail.com>" imported
gpg: Total number processed: 1
gpg: imported: 1
root@small-services:/srv/shiny-server/apps/ceiling_effects# apt update
Hit:1 https://repos.insights.digitalocean.com/apt/do-agent main InRelease
Get:2 http://mirrors.digitalocean.com/ubuntu focal InRelease [265 kB] 
Hit:3 http://mirrors.digitalocean.com/ubuntu focal-updates InRelease 
Hit:4 http://mirrors.digitalocean.com/ubuntu focal-backports InRelease 
Get:5 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease [3622 B] 
Hit:6 http://security.ubuntu.com/ubuntu focal-security InRelease 
Get:7 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages [19.6 kB]
Fetched 288 kB in 2s (169 kB/s)
Reading package lists... Done
Building dependency tree 
Reading state information... Done
39 packages can be upgraded. Run 'apt list --upgradable' to see them.

So, error is gone, and it works! So let’s upgrade:

root@small-services:/srv/shiny-server/apps/ceiling_effects# apt upgrade
Reading package lists... Done
Building dependency tree 
Reading state information... Done
Calculating upgrade... Done
The following packages will be upgraded:
apparmor apport libapparmor1 libnss-systemd libpam-systemd libproxy1v5 libsystemd0 libudev1 open-iscsi python3-apport python3-problem-report r-base r-base-core
r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix
r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended systemd systemd-sysv systemd-timesyncd ubuntu-minimal
ubuntu-server ubuntu-standard udev
39 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 53.4 MB of archives.
After this operation, 735 kB of additional disk space will be used.
Do you want to continue? [Y/n]

We see it wants to update R (that’s the r-base package), but it doesn’t say which version we are updating to, annoying, because it could be something other than 4.X. Alright, we try our luck, and in the middle of the upgrade output we see:

Get:19 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-lattice 0.20-41-1cran1focal0 [1174 kB]
Get:20 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-matrix 1.2-18-1focal0 [3432 kB]
Get:21 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-survival 3.1-12-1cran1.2004.0 [7462 kB]
Get:22 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-spatial 7.3-11-2focal0 [127 kB] 
Get:23 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-rpart 4.1-15-2focal0 [695 kB] 
Get:24 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-nnet 7.3-14-1.2004.0 [111 kB] 
Get:25 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-nlme 3.1.147-1.2004.0 [2198 kB] 
Get:26 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-mgcv 1.8-31-1cran1focal0 [2754 kB] 
Get:27 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-mass 7.3-51.6-1.2004.0 [1112 kB] 
Get:28 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-kernsmooth 2.23-17-1cran1.2004.0 [88.9 kB] 
Get:29 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-foreign 0.8.79-2.2004.0 [238 kB] 
Get:30 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-codetools 0.2-16-2.2004.0 [91.1 kB] 
Get:31 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-cluster 2.1.0-2focal0 [526 kB] 
Get:32 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-class 7.3-17-1.2004.0 [87.7 kB] 
Get:33 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-cran-boot 1.3-25-2.2004.0 [616 kB] 
Get:34 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-base-core 4.0.1-1.2004.0 [25.1 MB] 
Get:35 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-base 4.0.1-1.2004.0 [43.5 kB] 
Get:36 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-recommended 4.0.1-1.2004.0 [2772 B] 
Get:37 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-base-dev 4.0.1-1.2004.0 [4480 B] 
Get:38 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-base-html 4.0.1-1.2004.0 [90.4 kB] 
Get:39 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ r-doc-html 4.0.1-1.2004.0 [565 kB]

Cool, so it’s installing the right version of R: 4.X something (4.0.1-1.2004.0, whatever that means, 2004??). Anyway, so we go back into R!:

R version 4.0.1 (2020-06-06) -- "See Things Now"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

Hooray! We are now on R 4.0.1, so we should be able to install mnormt package to get psych package. Should! So let’s try:

> install.packages("psych")
Installing package into '/usr/local/lib/R/site-library'
(as 'lib' is unspecified)
Warning in install.packages("psych") :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to use a personal library instead? (yes/No/cancel) yes
Would you like to create a personal library
'~/R/x86_64-pc-linux-gnu-library/4.0'
to install packages into? (yes/No/cancel) yes
also installing the dependencies 'tmvnsim', 'mnormt'

trying URL 'https://cloud.r-project.org/src/contrib/tmvnsim_1.0-2.tar.gz'
Content type 'application/x-gzip' length 6052 bytes
==================================================
downloaded 6052 bytes

trying URL 'https://cloud.r-project.org/src/contrib/mnormt_2.0.0.tar.gz'
Content type 'application/x-gzip' length 48856 bytes (47 KB)
==================================================
downloaded 47 KB

trying URL 'https://cloud.r-project.org/src/contrib/psych_1.9.12.31.tar.gz'
Content type 'application/x-gzip' length 1724122 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package 'tmvnsim' ...
** package 'tmvnsim' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Fortran2CWrapper.c -o Fortran2CWrapper.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -c tmvnghk.f90 -o tmvnghk.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tmvnsim.so Fortran2CWrapper.o tmvnghk.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-tmvnsim/00new/tmvnsim/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tmvnsim)
* installing *source* package 'mnormt' ...
** package 'mnormt' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -c biv-nt.f -o biv-nt.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mnormt_init.c -o mnormt_init.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -c sadmvnt.f -o sadmvnt.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -c tvpack.f -o tvpack.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mnormt.so biv-nt.o mnormt_init.o sadmvnt.o tvpack.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-mnormt/00new/mnormt/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mnormt)
* installing *source* package 'psych' ...
** package 'psych' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psych)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'

We can indeed! I wish it gave a less verbose output. The typical user does not care about all this stuff. Default verbosity should be for user, not developers. Anyway, the next hassle is that since we updated R to a new major number, we need to reinstall all the packages. Aaahhhh. So let’s get started with tidyverse package:

> install.packages("tidyverse")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
also installing the dependencies 'desc', 'pkgbuild', 'rprojroot', 'pkgload', 'praise', 'colorspace', 'sys', 'ps', 'highr', 'markdown', 'plyr', 'testthat', 'farver', 'labeling', 'munsell', 'RColorBrewer', 'viridisLite', 'askpass', 'rematch', 'prettyunits', 'processx', 'knitr', 'yaml', 'evaluate', 'base64enc', 'tinytex', 'xfun', 'backports', 'generics', 'reshape2', 'assertthat', 'glue', 'fansi', 'DBI', 'lifecycle', 'tidyselect', 'blob', 'ellipsis', 'vctrs', 'gtable', 'isoband', 'scales', 'withr', 'pkgconfig', 'curl', 'openssl', 'utf8', 'clipr', 'cellranger', 'progress', 'callr', 'fs', 'rmarkdown', 'whisker', 'selectr', 'stringi', 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rstudioapi', 'rvest', 'stringr', 'tibble', 'tidyr', 'xml2'

trying URL 'https://cloud.r-project.org/src/contrib/desc_1.2.0.tar.gz'
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* installing *source* package 'praise' ...
** package 'praise' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (praise)
* installing *source* package 'colorspace' ...
** package 'colorspace' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colorspace.c -o colorspace.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o colorspace.so colorspace.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-colorspace/00new/colorspace/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (colorspace)
* installing *source* package 'sys' ...
** package 'sys' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c exec.c -o exec.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sys.so exec.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-sys/00new/sys/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sys)
* installing *source* package 'ps' ...
** package 'ps' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall px.c -o px
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-common.c -o api-common.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.c -o common.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extra.c -o extra.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dummy.c -o dummy.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error-codes.c -o error-codes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c posix.c -o posix.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-posix.c -o api-posix.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c linux.c -o linux.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-linux.c -o api-linux.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ps/00new/ps
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ps)
* installing *source* package 'highr' ...
** package 'highr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (highr)
* installing *source* package 'plyr' ...
** package 'plyr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-plyr/00new/plyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: package 'Rcpp' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'plyr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/plyr'
* installing *source* package 'farver' ...
** package 'farver' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ColorSpace.cpp -o ColorSpace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Comparison.cpp -o Comparison.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Conversion.cpp -o Conversion.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c encode.cpp -o encode.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c farver.cpp -o farver.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-farver/00new/farver/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (farver)
* installing *source* package 'labeling' ...
** package 'labeling' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (labeling)
* installing *source* package 'RColorBrewer' ...
** package 'RColorBrewer' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RColorBrewer)
* installing *source* package 'viridisLite' ...
** package 'viridisLite' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (viridisLite)
* installing *source* package 'rematch' ...
** package 'rematch' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rematch)
* installing *source* package 'prettyunits' ...
** package 'prettyunits' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
* installing *source* package 'yaml' ...
** package 'yaml' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.c -o api.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dumper.c -o dumper.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c emitter.c -o emitter.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c implicit.c -o implicit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loader.c -o loader.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parser.c -o parser.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_emit.c -o r_emit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_ext.c -o r_ext.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r_parse.c -o r_parse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reader.c -o reader.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanner.c -o scanner.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-yaml/00new/yaml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yaml)
* installing *source* package 'evaluate' ...
** package 'evaluate' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evaluate)
* installing *source* package 'base64enc' ...
** package 'base64enc' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uriencode.c -o uriencode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o base64enc.so base64.o uriencode.o utf8.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-base64enc/00new/base64enc/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (base64enc)
* installing *source* package 'xfun' ...
** package 'xfun' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xfun)
* installing *source* package 'backports' ...
** package 'backports' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsElt.c -o dotsElt.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotsLength.c -o dotsLength.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o backports.so dotsElt.o dotsLength.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-backports/00new/backports/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (backports)
* installing *source* package 'generics' ...
** package 'generics' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (generics)
* installing *source* package 'assertthat' ...
** package 'assertthat' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (assertthat)
* installing *source* package 'glue' ...
** package 'glue' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glue.c -o glue.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o glue.so glue.o init.o trim.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-glue/00new/glue/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glue)
* installing *source* package 'fansi' ...
** package 'fansi' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c assumptions.c -o assumptions.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c has.c -o has.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nchar.c -o nchar.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchar.c -o rnchar.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strip.c -o strip.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strsplit.c -o strsplit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tabs.c -o tabs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tohtml.c -o tohtml.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unhandled.c -o unhandled.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8.c -o utf8.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wrap.c -o wrap.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-fansi/00new/fansi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fansi)
* installing *source* package 'DBI' ...
** package 'DBI' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DBI)
* installing *source* package 'ellipsis' ...
** package 'ellipsis' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dots.c -o dots.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ellipsis.so dots.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ellipsis/00new/ellipsis/libs
** R
** byte-compile and prepare package for lazy loading
Error: package 'rlang' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'ellipsis'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/ellipsis'
* installing *source* package 'gtable' ...
** package 'gtable' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gtable)
* installing *source* package 'withr' ...
** package 'withr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (withr)
* installing *source* package 'pkgconfig' ...
** package 'pkgconfig' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgconfig)
* installing *source* package 'curl' ...
** package 'curl' successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu
Using PKG_LIBS=-lcurl
** libs
rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callbacks.c -o callbacks.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c curl.c -o curl.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c download.c -o download.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape.c -o escape.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fetch.c -o fetch.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c form.c -o form.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getdate.c -o getdate.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c handle.c -o handle.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ieproxy.c -o ieproxy.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interrupt.c -o interrupt.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c multi.c -o multi.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nslookup.c -o nslookup.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reflist.c -o reflist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typechecking.c -o typechecking.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c winidn.c -o winidn.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writer.c -o writer.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-curl/00new/curl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (curl)
* installing *source* package 'utf8' ...
** package 'utf8' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c as_utf8.c -o as_utf8.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bytes.c -o bytes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render.c -o render.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c render_table.c -o render_table.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c string.c -o string.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_encode.c -o utf8_encode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_format.c -o utf8_format.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_normalize.c -o utf8_normalize.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_valid.c -o utf8_valid.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8_width.c -o utf8_width.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/array.c -o utf8lite/src/array.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/char.c -o utf8lite/src/char.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/encode.c -o utf8lite/src/encode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/error.c -o utf8lite/src/error.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/escape.c -o utf8lite/src/escape.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/graph.c -o utf8lite/src/graph.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/render.c -o utf8lite/src/render.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/text.c -o utf8lite/src/text.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iutf8lite/src -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-utf8/00new/utf8/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (utf8)
* installing *source* package 'clipr' ...
** package 'clipr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clipr)
* installing *source* package 'fs' ...
** package 'fs' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cc -o init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c id.cc -o id.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cc -o utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c file.cc -o file.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c path.cc -o path.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c link.cc -o link.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fs.cc -o fs.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dir.cc -o dir.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getmode.cc -o getmode.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error.cc -o error.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/getmode.cc -o unix/getmode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd/setmode.c -o bsd/setmode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd/strmode.c -o bsd/strmode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./libuv/include -I. -pthread -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bsd/reallocarray.c -o bsd/reallocarray.o
(cd libuv \
&& CC="gcc -std=gnu99" CFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" ./configure --quiet)
make --directory=libuv \
HAVE_DTRACE=0
make[1]: Entering directory '/tmp/RtmpNUdwBH/R.INSTALL1aede16805074/fs/src/libuv'
CC src/libuv_la-fs-poll.lo
CC src/libuv_la-inet.lo
CC src/libuv_la-threadpool.lo
CC src/libuv_la-uv-common.lo
CC src/libuv_la-version.lo
CC src/unix/libuv_la-async.lo
CC src/unix/libuv_la-core.lo
CC src/unix/libuv_la-dl.lo
CC src/unix/libuv_la-fs.lo
CC src/unix/libuv_la-getaddrinfo.lo
CC src/unix/libuv_la-getnameinfo.lo
CC src/unix/libuv_la-loop-watcher.lo
CC src/unix/libuv_la-loop.lo
CC src/unix/libuv_la-pipe.lo
CC src/unix/libuv_la-poll.lo
CC src/unix/libuv_la-process.lo
CC src/unix/libuv_la-signal.lo
CC src/unix/libuv_la-stream.lo
CC src/unix/libuv_la-tcp.lo
CC src/unix/libuv_la-thread.lo
src/unix/thread.c: In function 'uv_thread_create':
src/unix/thread.c:198:35: warning: cast between incompatible function types from 'void (*)(void *)' to 'void * (*)(void *)' [-Wcast-function-type]
198 | err = pthread_create(tid, attr, (void*(*)(void*)) entry, arg);
| ^
CC src/unix/libuv_la-timer.lo
CC src/unix/libuv_la-tty.lo
CC src/unix/libuv_la-udp.lo
CC src/unix/libuv_la-linux-core.lo
src/unix/linux-core.c: In function 'uv__io_poll':
src/unix/linux-core.c:343:5: warning: converting a packed 'struct uv__epoll_event' pointer (alignment 1) to a 'uv__io_t' {aka 'struct uv__io_s'} pointer (alignment 8) may result in an unaligned pointer value [-Waddress-of-packed-member]
343 | loop->watchers[loop->nwatchers] = (void*) events;
| ^~~~
In file included from src/unix/internal.h:38,
from src/unix/linux-core.c:27:
src/unix/linux-syscalls.h:90:8: note: defined here
90 | struct uv__epoll_event {
| ^~~~~~~~~~~~~~~
In file included from ./include/uv.h:62,
from src/unix/linux-core.c:26:
./include/uv-unix.h:93:8: note: defined here
93 | struct uv__io_s {
| ^~~~~~~~
CC src/unix/libuv_la-linux-inotify.lo
CC src/unix/libuv_la-linux-syscalls.lo
CC src/unix/libuv_la-procfs-exepath.lo
CC src/unix/libuv_la-proctitle.lo
CC src/unix/libuv_la-sysinfo-loadavg.lo
CC src/unix/libuv_la-sysinfo-memory.lo
CCLD libuv.la
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/tmp/RtmpNUdwBH/R.INSTALL1aede16805074/fs/src/libuv'
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fs.so init.o id.o utils.o file.o path.o link.o fs.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv/.libs/libuv.a -pthread -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-fs/00new/fs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fs)
* installing *source* package 'whisker' ...
** package 'whisker' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (whisker)
* installing *source* package 'stringi' ...
** package 'stringi' successfully unpacked and MD5 sums checked
** using staged installation
checking for R_HOME... /usr/lib/R
checking for R... /usr/lib/R/bin/R
checking for endianness... little
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /usr/bin/cat
checking for local ICUDT_DIR... icu61/data
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 66.1
checking for ICU4C >= 55... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether we may build an ICU4C-based project... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes
checking for available ICU data library (ucnv, uloc, utrans)... yes
checking for available ICU data library (ucol)... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R

*** stringi configure summary:
ICU_FOUND=1
STRINGI_CXXSTD=CXX_STD=CXX11
STRINGI_CFLAGS= -fpic
STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
STRINGI_CXXFLAGS= -fpic
STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 
STRINGI_LIBS=-licui18n -licuuc -licudata

*** compiler settings used:
CC=gcc -std=gnu99
LD=g++ -std=gnu++11
CFLAGS=-g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic 
CPPFLAGS= -UDEBUG -DNDEBUG
CXX=g++ -std=gnu++11
CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic 
LDFLAGS= 
LIBS=

** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listint.cpp -o stri_container_listint.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listraw.cpp -o stri_container_listraw.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_listutf8.cpp -o stri_container_listutf8.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_regex.cpp -o stri_container_regex.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_usearch.cpp -o stri_container_usearch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf16.cpp -o stri_container_utf16.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8.cpp -o stri_container_utf8.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_detection.cpp -o stri_encoding_detection.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_encoding_management.cpp -o stri_encoding_management.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_escape.cpp -o stri_escape.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_exception.cpp -o stri_exception.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ICU_settings.cpp -o stri_ICU_settings.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_join.cpp -o stri_join.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_length.cpp -o stri_length.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_pad.cpp -o stri_pad.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_prepare_arg.cpp -o stri_prepare_arg.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_random.cpp -o stri_random.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_reverse.cpp -o stri_reverse.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_count.cpp -o stri_search_class_count.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_detect.cpp -o stri_search_class_detect.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_extract.cpp -o stri_search_class_extract.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_locate.cpp -o stri_search_class_locate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_replace.cpp -o stri_search_class_replace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_split.cpp -o stri_search_class_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_subset.cpp -o stri_search_class_subset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_class_trim.cpp -o stri_search_class_trim.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_common.cpp -o stri_search_common.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_count.cpp -o stri_search_coll_count.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_split.cpp -o stri_search_coll_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-stringi/00new/stringi
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringi)
* installing *source* package 'purrr' ...
** package 'purrr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c backports.c -o backports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c flatten.c -o flatten.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map.c -o map.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pluck.c -o pluck.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-purrr/00new/purrr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'rlang' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'purrr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/purrr'
* installing *source* package 'rstudioapi' ...
** package 'rstudioapi' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstudioapi)
* installing *source* package 'xml2' ...
** package 'xml2' successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/libxml2
Using PKG_LIBS=-lxml2
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_doc.cpp -o xml2_doc.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_init.cpp -o xml2_init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_namespace.cpp -o xml2_namespace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_node.cpp -o xml2_node.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_output.cpp -o xml2_output.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_schema.cpp -o xml2_schema.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_url.cpp -o xml2_url.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xml2_xpath.cpp -o xml2_xpath.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-xml2/00new/xml2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xml2)
* installing *source* package 'rprojroot' ...
** package 'rprojroot' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rprojroot)
* installing *source* package 'markdown' ...
** package 'markdown' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rbase64.c -o Rbase64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmarkdown.c -o Rmarkdown.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autolink.c -o autolink.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c buffer.c -o buffer.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_href_e.c -o houdini_href_e.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c houdini_html_e.c -o houdini_html_e.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html.c -o html.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c html_smartypants.c -o html_smartypants.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markdown.c -o markdown.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stack.c -o stack.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-markdown/00new/markdown/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (markdown)
* installing *source* package 'munsell' ...
** package 'munsell' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (munsell)
* installing *source* package 'askpass' ...
** package 'askpass' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c askpass.c -o askpass.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o askpass.so askpass.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-askpass/00new/askpass/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (askpass)
* installing *source* package 'processx' ...
** package 'processx' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall tools/px.c -o tools/px
gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g supervisor/supervisor.c supervisor/utils.c \
-o supervisor/supervisor
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c client.c -o client.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99 -shared -L"/usr/lib/R/lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o client.so base64.o client.o errors.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poll.c -o poll.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-connection.c -o processx-connection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-vector.c -o processx-vector.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create-time.c -o create-time.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/childlist.c -o unix/childlist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/connection.c -o unix/connection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/processx.c -o unix/processx.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/sigchld.c -o unix/sigchld.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/utils.c -o unix/utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/named_pipe.c -o unix/named_pipe.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cleancall.c -o cleancall.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-processx/00new/processx
** R
** inst
** byte-compile and prepare package for lazy loading
Error : package 'R6' was installed before R 4.0.0: please re-install it
Error: unable to load R code in package 'processx'
Execution halted
ERROR: lazy loading failed for package 'processx'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/processx'
* installing *source* package 'tinytex' ...
** package 'tinytex' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tinytex)
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'rlang' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'lifecycle'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/lifecycle'
ERROR: dependency 'ellipsis' is not available for package 'vctrs'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/vctrs'
* installing *source* package 'cli' ...
** package 'cli' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'crayon' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'cli'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/cli'
* installing *source* package 'lubridate' ...
** package 'lubridate' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o
ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c update.cpp -o update.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period.c -o period.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/usr/local/lib/R/site-library/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tparse.c -o tparse.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-lubridate/00new/lubridate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: package 'Rcpp' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'lubridate'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/lubridate'
* installing *source* package 'stringr' ...
** package 'stringr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: package 'magrittr' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'stringr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/stringr'
* installing *source* package 'desc' ...
** package 'desc' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'R6' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'desc'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/desc'
ERROR: dependency 'stringr' is not available for package 'knitr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/knitr'
ERROR: dependencies 'plyr', 'stringr' are not available for package 'reshape2'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/reshape2'
ERROR: dependencies 'ellipsis', 'purrr', 'vctrs' are not available for package 'tidyselect'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tidyselect'
ERROR: dependency 'vctrs' is not available for package 'blob'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/blob'
ERROR: dependency 'lifecycle' is not available for package 'scales'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/scales'
* installing *source* package 'openssl' ...
** package 'openssl' successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1
** libs
rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bignum.c -o bignum.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cert.c -o cert.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compatibility.c -o compatibility.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c diffie.c -o diffie.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envelope.c -o envelope.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c error.c -o error.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keygen.c -o keygen.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c keys.c -o keys.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c onload.c -o onload.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c openssh.c -o openssh.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c password.c -o password.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbkdf.c -o pbkdf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pem.c -o pem.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs12.c -o pkcs12.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pkcs7.c -o pkcs7.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rand.c -o rand.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rsa.c -o rsa.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signing.c -o signing.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ssl.c -o ssl.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stream.c -o stream.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.c -o write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c x25519.c -o x25519.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bcrypt/blowfish.c -o bcrypt/blowfish.o
ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-openssl/00new/openssl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (openssl)
ERROR: dependency 'processx' is not available for package 'callr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/callr'
ERROR: dependency 'stringr' is not available for package 'selectr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/selectr'
ERROR: dependency 'vctrs' is not available for package 'hms'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/hms'
ERROR: dependencies 'cli', 'vctrs' are not available for package 'pillar'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/pillar'
ERROR: dependencies 'callr', 'cli', 'desc' are not available for package 'pkgbuild'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/pkgbuild'
ERROR: dependency 'hms' is not available for package 'progress'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress'
ERROR: dependencies 'knitr', 'stringr' are not available for package 'rmarkdown'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/rmarkdown'
* installing *source* package 'httr' ...
** package 'httr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Error: package 'R6' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'httr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/httr'
ERROR: dependencies 'cli', 'ellipsis', 'lifecycle', 'pillar', 'vctrs' are not available for package 'tibble'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tibble'
ERROR: dependencies 'cli', 'desc', 'pkgbuild' are not available for package 'pkgload'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/pkgload'
ERROR: dependency 'tibble' is not available for package 'cellranger'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/cellranger'
ERROR: dependencies 'ellipsis', 'lifecycle', 'tibble', 'tidyselect', 'vctrs' are not available for package 'dplyr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/dplyr'
ERROR: dependencies 'ellipsis', 'tibble' are not available for package 'forcats'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/forcats'
ERROR: dependencies 'tibble', 'hms' are not available for package 'readr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/readr'
ERROR: dependencies 'callr', 'rmarkdown' are not available for package 'reprex'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/reprex'
ERROR: dependencies 'httr', 'selectr' are not available for package 'rvest'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/rvest'
ERROR: dependencies 'cli', 'ellipsis', 'pkgload' are not available for package 'testthat'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat'
ERROR: dependencies 'dplyr', 'lifecycle', 'purrr', 'tibble', 'tidyselect', 'blob' are not available for package 'dbplyr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/dbplyr'
ERROR: dependencies 'forcats', 'hms', 'readr', 'tibble', 'tidyselect', 'vctrs' are not available for package 'haven'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/haven'
ERROR: dependencies 'cellranger', 'tibble', 'progress' are not available for package 'readxl'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/readxl'
ERROR: dependencies 'dplyr', 'ellipsis', 'purrr', 'tibble', 'tidyselect', 'vctrs', 'lifecycle' are not available for package 'tidyr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tidyr'
ERROR: dependency 'testthat' is not available for package 'isoband'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/isoband'
ERROR: dependencies 'dplyr', 'purrr', 'reshape2', 'stringr', 'tibble', 'tidyr' are not available for package 'broom'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/broom'
ERROR: dependencies 'isoband', 'scales', 'tibble' are not available for package 'ggplot2'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/ggplot2'
ERROR: dependencies 'broom', 'purrr', 'tibble', 'tidyr', 'tidyselect', 'vctrs' are not available for package 'modelr'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/modelr'
ERROR: dependencies 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rvest', 'stringr', 'tibble', 'tidyr' are not available for package 'tidyverse'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tidyverse'

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
There were 41 warnings (use warnings() to see them)

You get that? 1610 lines output to install one package and its dependencies (79 packages!), and it even failed in the end. OK, so why did it fail? Is there a list of things to fix in the bottom? Nope, that would be too easy, we have to skim all the lines and find the few relevant parts. If you’re wondering, it’s these (I think!):

Error: package 'rlang' was installed before R 4.0.0: please re-install it
Error : package 'R6' was installed before R 4.0.0: please re-install it
Error: package 'crayon' was installed before R 4.0.0: please re-install it
Error: package 'Rcpp' was installed before R 4.0.0: please re-install it
Error: package 'magrittr' was installed before R 4.0.0: please re-install it

(Maybe you are wondering about the extra space in line 2, I don’t know either, it’s in the output.)

So to find these, I searched the output for “Error” and these seem the most relevant. They are saying that the packages were somehow installed under older R version, despite we just upgrading to R 4.X. That should’t happen because packages are generally installed into a directory that fits the major version. Anyhow, it means we need to reinstall them, and it won’t do it for us. So:

> install.packages("R6")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/R6_2.4.1.tar.gz'
Content type 'application/x-gzip' length 35536 bytes (34 KB)
==================================================
downloaded 34 KB

* installing *source* package 'R6' ...
** package 'R6' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R6)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
> install.packages("Rcpp")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_1.0.4.6.tar.gz'
Content type 'application/x-gzip' length 2751467 bytes (2.6 MB)
==================================================
downloaded 2.6 MB

* installing *source* package 'Rcpp' ...
** package 'Rcpp' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.cpp -o attributes.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c date.cpp -o date.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c module.cpp -o module.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcpp_init.cpp -o rcpp_init.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-Rcpp/00new/Rcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpp)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
> install.packages("rlang")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/rlang_0.4.6.tar.gz'
Content type 'application/x-gzip' length 835198 bytes (815 KB)
==================================================
downloaded 815 KB

* installing *source* package 'rlang' ...
** package 'rlang' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./lib/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c capture.c -o capture.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./lib/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c export.c -o export.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./lib/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internal.c -o internal.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./lib/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lib.c -o lib.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I./lib/ -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rlang.so capture.o export.o internal.o lib.o version.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-rlang/00new/rlang/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rlang)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
> install.packages("crayon")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/crayon_1.3.4.tar.gz'
Content type 'application/x-gzip' length 658694 bytes (643 KB)
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* installing *source* package 'crayon' ...
** package 'crayon' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crayon)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
> install.packages("magrittr")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/magrittr_1.5.tar.gz'
Content type 'application/x-gzip' length 200504 bytes (195 KB)
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downloaded 195 KB

* installing *source* package 'magrittr' ...
** package 'magrittr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (magrittr)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'

(Yes, I did them in the wrong order.)

Phew, they didn’t give more errors! So, it’s time to try tidyverse again!

> install.packages("tidyverse")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
also installing the dependencies 'desc', 'pkgbuild', 'pkgload', 'plyr', 'testthat', 'processx', 'knitr', 'reshape2', 'lifecycle', 'tidyselect', 'blob', 'ellipsis', 'vctrs', 'isoband', 'scales', 'cellranger', 'progress', 'callr', 'rmarkdown', 'selectr', 'broom', 'cli', 'dbplyr', 'dplyr', 'forcats', 'ggplot2', 'haven', 'hms', 'httr', 'lubridate', 'modelr', 'pillar', 'purrr', 'readr', 'readxl', 'reprex', 'rvest', 'stringr', 'tibble', 'tidyr'

trying URL 'https://cloud.r-project.org/src/contrib/desc_1.2.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/pkgbuild_1.0.8.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/pkgload_1.1.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/plyr_1.8.6.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/testthat_2.3.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/processx_3.4.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/knitr_1.28.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/reshape2_1.4.4.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/lifecycle_0.2.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/tidyselect_1.1.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/blob_1.2.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/ellipsis_0.3.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/vctrs_0.3.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/isoband_0.2.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/scales_1.1.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/cellranger_1.1.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/callr_3.4.3.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/rmarkdown_2.2.tar.gz'
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downloaded 3.0 MB

trying URL 'https://cloud.r-project.org/src/contrib/selectr_0.4-2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/broom_0.5.6.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/cli_2.0.2.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/dbplyr_1.4.4.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/dplyr_1.0.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/forcats_0.5.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/ggplot2_3.3.1.tar.gz'
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downloaded 2.9 MB

trying URL 'https://cloud.r-project.org/src/contrib/haven_2.3.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/hms_0.5.3.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/httr_1.4.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/lubridate_1.7.9.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/modelr_0.1.8.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.4.4.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/readxl_1.3.1.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/reprex_0.3.0.tar.gz'
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trying URL 'https://cloud.r-project.org/src/contrib/tidyr_1.1.0.tar.gz'
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* installing *source* package 'desc' ...
** package 'desc' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (desc)
* installing *source* package 'plyr' ...
** package 'plyr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loop_apply.c -o loop_apply.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split-numeric.cpp -o split-numeric.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-plyr/00new/plyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plyr)
* installing *source* package 'processx' ...
** package 'processx' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall tools/px.c -o tools/px
gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g supervisor/supervisor.c supervisor/utils.c \
-o supervisor/supervisor
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c client.c -o client.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99 -shared -L"/usr/lib/R/lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o client.so base64.o client.o errors.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c poll.c -o poll.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-connection.c -o processx-connection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c processx-vector.c -o processx-vector.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create-time.c -o create-time.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/childlist.c -o unix/childlist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/connection.c -o unix/connection.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/processx.c -o unix/processx.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/sigchld.c -o unix/sigchld.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/utils.c -o unix/utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unix/named_pipe.c -o unix/named_pipe.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cleancall.c -o cleancall.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-processx/00new/processx
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (processx)
* installing *source* package 'lifecycle' ...
** package 'lifecycle' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lifecycle)
* installing *source* package 'ellipsis' ...
** package 'ellipsis' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dots.c -o dots.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ellipsis.so dots.o init.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ellipsis/00new/ellipsis/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ellipsis)
* installing *source* package 'cli' ...
** package 'cli' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cli)
* installing *source* package 'httr' ...
** package 'httr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (httr)
* installing *source* package 'lubridate' ...
** package 'lubridate' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o
ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c update.cpp -o update.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c period.c -o period.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tparse.c -o tparse.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-lubridate/00new/lubridate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lubridate)
* installing *source* package 'purrr' ...
** package 'purrr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c backports.c -o backports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c flatten.c -o flatten.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map.c -o map.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pluck.c -o pluck.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose.c -o transpose.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-purrr/00new/purrr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (purrr)
* installing *source* package 'stringr' ...
** package 'stringr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringr)
* installing *source* package 'knitr' ...
** package 'knitr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (knitr)
* installing *source* package 'reshape2' ...
** package 'reshape2' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o reshape2.so RcppExports.o melt.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-reshape2/00new/reshape2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (reshape2)
* installing *source* package 'vctrs' ...
** package 'vctrs' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altrep-rle.c -o altrep-rle.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arg-counter.c -o arg-counter.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arg.c -o arg.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c c-unchop.c -o c-unchop.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c c.c -o c.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c callables.c -o callables.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast-bare.c -o cast-bare.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast-dispatch.c -o cast-dispatch.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cast.c -o cast.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compare.c -o compare.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conditions.c -o conditions.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dictionary.c -o dictionary.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dim.c -o dim.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c equal.c -o equal.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fields.c -o fields.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group.c -o group.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c growable.c -o growable.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash.c -o hash.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c proxy-restore.c -o proxy-restore.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c proxy.c -o proxy.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptype2-dispatch.c -o ptype2-dispatch.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rep.c -o rep.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c shape.c -o shape.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size-common.c -o size-common.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-array.c -o slice-array.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-assign-array.c -o slice-assign-array.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-assign.c -o slice-assign.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice-chop.c -o slice-chop.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice.c -o slice.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript-loc.c -o subscript-loc.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c translate.c -o translate.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-data-frame.c -o type-data-frame.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-date-time.c -o type-date-time.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-factor.c -o type-factor.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-info.c -o type-info.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type-tibble.c -o type-tibble.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type.c -o type.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type2.c -o type2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typeof2-s3.c -o typeof2-s3.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c typeof2.c -o typeof2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unspecified.c -o unspecified.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils-dispatch.c -o utils-dispatch.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o conditions.o dictionary.o dim.o equal.o fields.o group.o growable.o hash.o init.o names.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o version.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-vctrs/00new/vctrs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vctrs)
* installing *source* package 'scales' ...
** package 'scales' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)
* installing *source* package 'callr' ...
** package 'callr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (callr)
* installing *source* package 'selectr' ...
** package 'selectr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (selectr)
* installing *source* package 'pkgbuild' ...
** package 'pkgbuild' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgbuild)
* installing *source* package 'tidyselect' ...
** package 'tidyselect' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyselect)
* installing *source* package 'blob' ...
** package 'blob' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blob)
* installing *source* package 'rmarkdown' ...
** package 'rmarkdown' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'htmltools' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'rmarkdown'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/rmarkdown'
* installing *source* package 'hms' ...
** package 'hms' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hms)
* installing *source* package 'pillar' ...
** package 'pillar' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pillar)
* installing *source* package 'rvest' ...
** package 'rvest' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rvest)
* installing *source* package 'pkgload' ...
** package 'pkgload' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unlock.c -o unlock.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o pkgload.so unlock.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-pkgload/00new/pkgload/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgload)
* installing *source* package 'progress' ...
** package 'progress' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (progress)
ERROR: dependency 'rmarkdown' is not available for package 'reprex'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/reprex'
* installing *source* package 'tibble' ...
** package 'tibble' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attributes.c -o attributes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrixToDataFrame.c -o matrixToDataFrame.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-tibble/00new/tibble/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tibble)
* installing *source* package 'testthat' ...
** package 'testthat' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reassign.c -o reassign.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-catch.cpp -o test-catch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-example.cpp -o test-example.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-testthat/00new/testthat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)
* installing *source* package 'cellranger' ...
** package 'cellranger' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cellranger)
* installing *source* package 'dplyr' ...
** package 'dplyr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.cpp -o filter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c funs.cpp -o funs.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_by.cpp -o group_by.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c group_data.cpp -o group_data.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imports.cpp -o imports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mutate.cpp -o mutate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slice.cpp -o slice.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summarise.cpp -o summarise.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dplyr.so filter.o funs.o group_by.o group_data.o imports.o init.o mutate.o slice.o summarise.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-dplyr/00new/dplyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dplyr)
* installing *source* package 'forcats' ...
** package 'forcats' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (forcats)
* installing *source* package 'readr' ...
** package 'readr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Collector.cpp -o Collector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CollectorGuess.cpp -o CollectorGuess.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Iconv.cpp -o Iconv.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LocaleInfo.cpp -o LocaleInfo.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Reader.cpp -o Reader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Source.cpp -o Source.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Tokenizer.cpp -o Tokenizer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerDelim.cpp -o TokenizerDelim.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerFwf.cpp -o TokenizerFwf.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TokenizerWs.cpp -o TokenizerWs.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connection.cpp -o connection.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.cpp -o datetime.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grisu3.c -o grisu3.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localtime.c -o localtime.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.cpp -o parse.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.cpp -o read.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c type_convert.cpp -o type_convert.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write.cpp -o write.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write_connection.cpp -o write_connection.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -I. -Ircon -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c write_delim.cpp -o write_delim.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/usr/local/lib/R/site-library/BH/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcon/connection.c -o rcon/connection.o
mkdir -p ../inst/rcon
g++ -std=gnu++11 -shared -L"/usr/lib/R/lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o ../inst/rcon/librcon.so rcon/connection.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o RcppExports.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o datetime.o grisu3.o init.o localtime.o parse.o read.o type_convert.o write.o write_connection.o write_delim.o -L. -lrcon -L../inst/rcon -Wl,-rpath,$ORIGIN/../rcon -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-readr/00new/readr
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (readr)
* installing *source* package 'isoband' ...
** package 'isoband' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clip-lines.cpp -o clip-lines.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoband.cpp -o isoband.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygon.cpp -o polygon.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c separate-polygons.cpp -o separate-polygons.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-clip-lines.cpp -o test-clip-lines.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-runner.cpp -o test-runner.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/testthat/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test-separate-polygons.cpp -o test-separate-polygons.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o isoband.so RcppExports.o clip-lines.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-isoband/00new/isoband/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (isoband)
* installing *source* package 'dbplyr' ...
** package 'dbplyr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dbplyr)
* installing *source* package 'haven' ...
** package 'haven' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tagged_na.c -o tagged_na.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_parser.c -o readstat/readstat_parser.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_bits.c -o readstat/readstat_bits.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_metadata.c -o readstat/readstat_metadata.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_variable.c -o readstat/readstat_variable.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_writer.c -o readstat/readstat_writer.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_error.c -o readstat/readstat_error.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_convert.c -o readstat/readstat_convert.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/CKHashTable.c -o readstat/CKHashTable.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/readstat_value.c -o readstat/readstat_value.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/ieee.c -o readstat/sas/ieee.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_xport.c -o readstat/sas/readstat_xport.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav_compress.c -o readstat/spss/readstat_sav_compress.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_por.c -o readstat/spss/readstat_por.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav_parse_timestamp.c -o readstat/spss/readstat_sav_parse_timestamp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_zsav_read.c -o readstat/spss/readstat_zsav_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav_write.c -o readstat/spss/readstat_sav_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_por_write.c -o readstat/spss/readstat_por_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_spss.c -o readstat/spss/readstat_spss.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_zsav_write.c -o readstat/spss/readstat_zsav_write.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_sav_parse.c -o readstat/spss/readstat_sav_parse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_por_parse.c -o readstat/spss/readstat_por_parse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/stata/readstat_dta_read.c -o readstat/stata/readstat_dta_read.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/stata/readstat_dta.c -o readstat/stata/readstat_dta.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/stata/readstat_dta_parse_timestamp.c -o readstat/stata/readstat_dta_parse_timestamp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/stata/readstat_dta_write.c -o readstat/stata/readstat_dta_write.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DfReader.cpp -o DfReader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DfWriter.cpp -o DfWriter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c haven_types.cpp -o haven_types.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o haven.so tagged_na.o readstat/readstat_parser.o readstat/readstat_bits.o readstat/readstat_metadata.o readstat/readstat_io_unistd.o readstat/readstat_variable.o readstat/readstat_writer.o readstat/readstat_error.o readstat/readstat_convert.o readstat/CKHashTable.o readstat/readstat_malloc.o readstat/readstat_value.o readstat/sas/readstat_xport_write.o readstat/sas/readstat_sas7bcat_read.o readstat/sas/readstat_sas7bdat_write.o readstat/sas/readstat_sas7bcat_write.o readstat/sas/ieee.o readstat/sas/readstat_xport_read.o readstat/sas/readstat_sas.o readstat/sas/readstat_sas_rle.o readstat/sas/readstat_xport.o readstat/sas/readstat_sas7bdat_read.o readstat/spss/readstat_sav_compress.o readstat/spss/readstat_spss_parse.o readstat/spss/readstat_sav_read.o readstat/spss/readstat_por_read.o readstat/spss/readstat_sav.o readstat/spss/readstat_por.o readstat/spss/readstat_sav_parse_timestamp.o readstat/spss/readstat_zsav_read.o readstat/spss/readstat_sav_write.o readstat/spss/readstat_zsav_compress.o readstat/spss/readstat_por_write.o readstat/spss/readstat_spss.o readstat/spss/readstat_zsav_write.o readstat/spss/readstat_sav_parse.o readstat/spss/readstat_por_parse.o readstat/stata/readstat_dta_read.o readstat/stata/readstat_dta.o readstat/stata/readstat_dta_parse_timestamp.o readstat/stata/readstat_dta_write.o DfReader.o DfWriter.o haven_types.o RcppExports.o -lz -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-haven/00new/haven/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (haven)
* installing *source* package 'readxl' ...
** package 'readxl' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsWorkBook.cpp -o XlsWorkBook.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsWorkSheet.cpp -o XlsWorkSheet.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsxWorkBook.cpp -o XlsxWorkBook.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XlsxWorkSheet.cpp -o XlsxWorkSheet.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cran.c -o cran.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c endian.c -o endian.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ole.c -o ole.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xls.c -o xls.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xlstool.c -o xlstool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/progress/include' -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zip.cpp -o zip.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o readxl.so RcppExports.o XlsWorkBook.o XlsWorkSheet.o XlsxWorkBook.o XlsxWorkSheet.o cran.o endian.o ole.o xls.o xlstool.o zip.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-readxl/00new/readxl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (readxl)
* installing *source* package 'tidyr' ...
** package 'tidyr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fill.cpp -o fill.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c melt.cpp -o melt.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simplifyPieces.cpp -o simplifyPieces.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyr.so RcppExports.o fill.o melt.o simplifyPieces.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-tidyr/00new/tidyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyr)
* installing *source* package 'broom' ...
** package 'broom' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (broom)
* installing *source* package 'ggplot2' ...
** package 'ggplot2' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggplot2)
* installing *source* package 'modelr' ...
** package 'modelr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (modelr)
ERROR: dependency 'reprex' is not available for package 'tidyverse'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tidyverse'

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
Warning messages:
1: In install.packages("tidyverse") :
installation of package 'rmarkdown' had non-zero exit status
2: In install.packages("tidyverse") :
installation of package 'reprex' had non-zero exit status
3: In install.packages("tidyverse") :
installation of package 'tidyverse' had non-zero exit status

Only 1066 lines this time! And only 41 package dependencies! And 1 new error:

Error: package 'htmltools' was installed before R 4.0.0: please re-install it

Alright, so more  stuff like above, we repeat:

> install.packages("htmltools")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/htmltools_0.4.0.tar.gz'
Content type 'application/x-gzip' length 52542 bytes (51 KB)
==================================================
downloaded 51 KB

* installing *source* package 'htmltools' ...
** package 'htmltools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-htmltools/00new/htmltools/libs
** R
** byte-compile and prepare package for lazy loading
Error: package 'digest' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'htmltools'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/htmltools'

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
Warning message:
In install.packages("htmltools") :
installation of package 'htmltools' had non-zero exit status

They really like this error. OK, we do this digest package first then…

> install.packages("digest")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/digest_0.6.25.tar.gz'
Content type 'application/x-gzip' length 145642 bytes (142 KB)
==================================================
downloaded 142 KB

* installing *source* package 'digest' ...
** package 'digest' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SpookyV2.cpp -o SpookyV2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c aes.c -o aes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c crc32.c -o crc32.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c digest.c -o digest.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c digest2int.c -o digest2int.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pmurhash.c -o pmurhash.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raes.c -o raes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha1.c -o sha1.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha2.c -o sha2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sha256.c -o sha256.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c spooky_serialize.cpp -o spooky_serialize.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xxhash.c -o xxhash.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o digest.so SpookyV2.o aes.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-digest/00new/digest/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (digest)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'

And back to htmltools

> install.packages("htmltools")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/htmltools_0.4.0.tar.gz'
Content type 'application/x-gzip' length 52542 bytes (51 KB)
==================================================
downloaded 51 KB

* installing *source* package 'htmltools' ...
** package 'htmltools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-htmltools/00new/htmltools/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmltools)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'

Yay! So, tidyverse, 3rd attempt!

> install.packages("tidyverse")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
also installing the dependencies 'rmarkdown', 'reprex'

trying URL 'https://cloud.r-project.org/src/contrib/rmarkdown_2.2.tar.gz'
Content type 'application/x-gzip' length 3192895 bytes (3.0 MB)
==================================================
downloaded 3.0 MB

trying URL 'https://cloud.r-project.org/src/contrib/reprex_0.3.0.tar.gz'
Content type 'application/x-gzip' length 1052597 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

trying URL 'https://cloud.r-project.org/src/contrib/tidyverse_1.3.0.tar.gz'
Content type 'application/x-gzip' length 712837 bytes (696 KB)
==================================================
downloaded 696 KB

* installing *source* package 'rmarkdown' ...
** package 'rmarkdown' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmarkdown)
* installing *source* package 'reprex' ...
** package 'reprex' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (reprex)
* installing *source* package 'tidyverse' ...
** package 'tidyverse' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'jsonlite' was installed before R 4.0.0: please re-install it
Execution halted
ERROR: lazy loading failed for package 'tidyverse'
* removing '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0/tidyverse'

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
Warning message:
In install.packages("tidyverse") :
installation of package 'tidyverse' had non-zero exit status

Yet another sneaky one, alright, jsonlite package, you are up:

> install.packages("jsonlite")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/jsonlite_1.6.1.tar.gz'
Content type 'application/x-gzip' length 1057910 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

* installing *source* package 'jsonlite' ...
** package 'jsonlite' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-dEscXG/r-base-4.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR
installing to /home/shiny/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-jsonlite/00new/jsonlite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jsonlite)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'

Aaaaand, back to tidyverse, 4th try:

> install.packages("tidyverse")
Installing package into '/home/shiny/R/x86_64-pc-linux-gnu-library/4.0'
(as 'lib' is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/tidyverse_1.3.0.tar.gz'
Content type 'application/x-gzip' length 712837 bytes (696 KB)
==================================================
downloaded 696 KB

* installing *source* package 'tidyverse' ...
** package 'tidyverse' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyverse)

The downloaded source packages are in
'/tmp/Rtmps3WHYC/downloaded_packages'
> library(tidyverse)
-- Attaching packages --------------------------------------- tidyverse 1.3.0 --
v ggplot2 3.3.1 v purrr 0.3.4
v tibble 3.0.1 v dplyr 1.0.0
v tidyr 1.1.0 v stringr 1.4.0
v readr 1.3.1 v forcats 0.5.0
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()

It’s alive! We loaded it just to be really sure.

This concludes the exercise. No doubt, some of the additional packages will present some more funny errors.

(In point of fact, I then tried to install some more packages, and had to go through this pattern another 5 times.)

(For those who complain, this is just tidyverse, not R base! That’s true but R base sucks, so I am mentally treating them as one unit for the purposes of doing anything in R.)